5DFZ
Structure of Vps34 complex II from S. cerevisiae.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.939270, 1.254380, 1.254860 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 215.180, 226.840, 127.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.358 - 4.400 |
R-factor | 0.3687 |
Rwork | 0.368 |
R-free | 0.37620 |
Structure solution method | MAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.703 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHARP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.900 | 4.580 |
High resolution limit [Å] | 4.400 | 4.400 |
Rmerge | 4.820 | |
Number of reflections | 40224 | |
<I/σ(I)> | 21 | 1 |
Completeness [%] | 99.8 | 98.8 |
Redundancy | 32.2 | 15.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.1 | 290 | 300 mM sodium acetate pH 5.1, 3% 1,5- Diaminopentanedihydrochloride. grown at 290 K for 5 days |