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4WFN

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
50S ribosomal protein L2polymer27530107.81UniProt (Q9RXJ9)
Pfam (PF00181)
Pfam (PF03947)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
2B
(B)
50S ribosomal protein L3polymer21122477.21UniProt (Q9RXK2)
Pfam (PF00297)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
3C
(C)
50S ribosomal protein L4polymer20522308.21UniProt (Q9RXK1)
Pfam (PF00573)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
4D
(D)
50S ribosomal protein L5polymer18020379.91UniProt (Q9RXJ0)
Pfam (PF00281)
Pfam (PF00673)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
5E
(E)
50S ribosomal protein L6polymer18519613.61UniProt (Q9RSL3)
Pfam (PF00347)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
6F
(G)
50S ribosomal protein L13polymer17419223.21UniProt (Q9RXY1)
Pfam (PF00572)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
7G
(H)
50S ribosomal protein L14polymer13414256.51UniProt (Q9RXJ2)
Pfam (PF00238)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
8H
(I)
50S ribosomal protein L15polymer15616894.21UniProt (Q9RSK9)
Pfam (PF00828)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
9I
(J)
50S ribosomal protein L16polymer14116126.01UniProt (Q9RXJ5)
Pfam (PF00252)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
10J
(K)
50S ribosomal protein L17polymer11612926.11UniProt (Q9RSJ5)
Pfam (PF01196)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
11K
(L)
50S ribosomal protein L18polymer11412163.91UniProt (Q9RSL2)
Pfam (PF00861)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
12L
(M)
50S ribosomal protein L19polymer16518216.61UniProt (Q9RWB4)
Pfam (PF01245)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
13M
(N)
50S ribosomal protein L20polymer11813991.31UniProt (Q9RSW7)
Pfam (PF00453)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
14N
(O)
50S ribosomal protein L21polymer10011165.71UniProt (Q9RY64)
Pfam (PF00829)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
15O
(P)
50S ribosomal protein L22,50S ribosomal protein L22polymer13715544.31UniProt (Q9RXJ7)
Pfam (PF00237)
Deinococcus radiodurans
16P
(Q)
50S ribosomal protein L23polymer9510539.21UniProt (Q9RXK0)
Pfam (PF00276)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
17Q
(R)
50S ribosomal protein L24polymer11512384.41UniProt (Q9RXJ1)
Pfam (PF00467)
Pfam (PF17136)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
18R
(S)
50S ribosomal protein L25polymer23725415.41UniProt (Q9RX88)
Pfam (PF01386)
Pfam (PF14693)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)General stress protein CTC
19S
(T)
50S ribosomal protein L27polymer919609.11UniProt (Q9RY65)
Pfam (PF01016)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
20T
(U)
50S ribosomal protein L28polymer818982.61UniProt (Q9RRG8)
Pfam (PF00830)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
21U
(V)
50S ribosomal protein L29polymer677775.01UniProt (Q9RXJ4)
Pfam (PF00831)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
22V
(W)
50S ribosomal protein L30polymer556079.21UniProt (Q9RSL0)
Pfam (PF00327)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
23W
(Z)
50S ribosomal protein L32polymer606810.01UniProt (P49228)
Pfam (PF01783)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
24X
(1)
50S ribosomal protein L33polymer556374.51UniProt (Q9RSS4)
Pfam (PF00471)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
25Y
(2)
50S ribosomal protein L34polymer475626.61UniProt (Q9RSH2)
Pfam (PF00468)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
26Z
(3)
50S ribosomal protein L35polymer657318.91UniProt (Q9RSW6)
Pfam (PF01632)
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
27AA
(X)
23S ribosomal RNApolymer2880933405.01GenBank (11612676)Deinococcus radiodurans R1
28BA
(Y)
5S ribosomal RNApolymer12439911.91GenBank (11612676)Deinococcus radiodurans R1
29AB, AC, BB, BC, CA...
(X, A, B, K, M)
MAGNESIUM IONnon-polymer24.370Chemie (MG)
30JA
(X)
ERYTHROMYCIN Anon-polymer733.91Chemie (ERY)
Sequence modifications
P: 1 - 109 (UniProt: Q9RXJ7)
P: 113 - 137 (UniProt: Q9RXJ7)
PDBExternal DatabaseDetails
Val 110-linker
Pro 111-linker
Arg 112-linker
X: 1 - 2880 (GenBank: 11612676)
PDBExternal DatabaseDetails
U 1526Unk 2586412conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains28
Total formula weight1345626.3
Non-Polymers*Number of molecules71
Total formula weight2435.3
All*Total formula weight1348061.6
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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