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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WFN

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A50S ribosomal protein L2polymer27530107.81UniProt (Q9RXJ9)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
2B50S ribosomal protein L3polymer21122477.21UniProt (Q9RXK2)
Pfam (PF00297)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
3C50S ribosomal protein L4polymer20522308.21UniProt (Q9RXK1)
Pfam (PF00573)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
4D50S ribosomal protein L5polymer18020379.91UniProt (Q9RXJ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
5E50S ribosomal protein L6polymer18519613.61UniProt (Q9RSL3)
Pfam (PF00347)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
6G50S ribosomal protein L13polymer17419223.21UniProt (Q9RXY1)
Pfam (PF00572)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
7H50S ribosomal protein L14polymer13414256.51UniProt (Q9RXJ2)
Pfam (PF00238)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
8I50S ribosomal protein L15polymer15616894.21UniProt (Q9RSK9)
Pfam (PF00828)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
9J50S ribosomal protein L16polymer14116126.01UniProt (Q9RXJ5)
Pfam (PF00252)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
10K50S ribosomal protein L17polymer11612926.11UniProt (Q9RSJ5)
Pfam (PF01196)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
11L50S ribosomal protein L18polymer11412163.91UniProt (Q9RSL2)
Pfam (PF00861)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
12M50S ribosomal protein L19polymer16518216.61UniProt (Q9RWB4)
Pfam (PF01245)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
13N50S ribosomal protein L20polymer11813991.31UniProt (Q9RSW7)
Pfam (PF00453)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
14O50S ribosomal protein L21polymer10011165.71UniProt (Q9RY64)
Pfam (PF00829)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
15P50S ribosomal protein L22,50S ribosomal protein L22polymer13715544.31UniProt (Q9RXJ7)
Pfam (PF00237)
In PDB		Deinococcus radiodurans
16Q50S ribosomal protein L23polymer9510539.21UniProt (Q9RXK0)
Pfam (PF00276)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
17R50S ribosomal protein L24polymer11512384.41UniProt (Q9RXJ1)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
18S50S ribosomal protein L25polymer23725415.41UniProt (Q9RX88)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)General stress protein CTC
19T50S ribosomal protein L27polymer919609.11UniProt (Q9RY65)
Pfam (PF01016)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
20U50S ribosomal protein L28polymer818982.61UniProt (Q9RRG8)
Pfam (PF00830)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
21V50S ribosomal protein L29polymer677775.01UniProt (Q9RXJ4)
Pfam (PF00831)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
22W50S ribosomal protein L30polymer556079.21UniProt (Q9RSL0)
Pfam (PF00327)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
23Z50S ribosomal protein L32polymer606810.01UniProt (P49228)
Pfam (PF01783)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
24150S ribosomal protein L33polymer556374.51UniProt (Q9RSS4)
Pfam (PF00471)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
25250S ribosomal protein L34polymer475626.61UniProt (Q9RSH2)
Pfam (PF00468)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
26350S ribosomal protein L35polymer657318.91UniProt (Q9RSW6)
Pfam (PF01632)
In PDB		Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
27X23S ribosomal RNApolymer2880933405.01GenBank (11612676)Deinococcus radiodurans R1
28Y5S ribosomal RNApolymer12439911.91GenBank (11612676)Deinococcus radiodurans R1
29X, A, B, K, MMAGNESIUM IONnon-polymer24.370Chemie (MG)
30XERYTHROMYCIN Anon-polymer733.91Chemie (ERY)
Sequence modifications
P: 1 - 109 (UniProt: Q9RXJ7)
P: 113 - 137 (UniProt: Q9RXJ7)
PDBExternal DatabaseDetails
Val 110-linker
Pro 111-linker
Arg 112-linker
X: 1 - 2880 (GenBank: 11612676)
PDBExternal DatabaseDetails
U 1526Unk 2586412conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains28
Total formula weight1345626.3
Non-Polymers*Number of molecules71
Total formula weight2435.3
All*Total formula weight1348061.6
*Water molecules are not included.

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PDB entries from 2024-07-10

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