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4WFN

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin

Functional Information from GO Data
ChainGOidnamespacecontents
10000049molecular_functiontRNA binding
10003735molecular_functionstructural constituent of ribosome
10005737cellular_componentcytoplasm
10005840cellular_componentribosome
10006412biological_processtranslation
10019843molecular_functionrRNA binding
10022625cellular_componentcytosolic large ribosomal subunit
10043229cellular_componentintracellular organelle
11990904cellular_componentribonucleoprotein complex
20003735molecular_functionstructural constituent of ribosome
20005840cellular_componentribosome
20006412biological_processtranslation
20019843molecular_functionrRNA binding
21990904cellular_componentribonucleoprotein complex
30003735molecular_functionstructural constituent of ribosome
30005840cellular_componentribosome
30006412biological_processtranslation
30019843molecular_functionrRNA binding
30022625cellular_componentcytosolic large ribosomal subunit
31990904cellular_componentribonucleoprotein complex
A0002181biological_processcytoplasmic translation
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0005840cellular_componentribosome
A0006412biological_processtranslation
A0015934cellular_componentlarge ribosomal subunit
A0016740molecular_functiontransferase activity
A0019843molecular_functionrRNA binding
A0022625cellular_componentcytosolic large ribosomal subunit
A1990904cellular_componentribonucleoprotein complex
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0019843molecular_functionrRNA binding
B0022625cellular_componentcytosolic large ribosomal subunit
B1990904cellular_componentribonucleoprotein complex
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0019843molecular_functionrRNA binding
C1990904cellular_componentribonucleoprotein complex
D0000049molecular_functiontRNA binding
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0019843molecular_functionrRNA binding
D0022625cellular_componentcytosolic large ribosomal subunit
D1990904cellular_componentribonucleoprotein complex
E0002181biological_processcytoplasmic translation
E0003735molecular_functionstructural constituent of ribosome
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0019843molecular_functionrRNA binding
E0022625cellular_componentcytosolic large ribosomal subunit
E1990904cellular_componentribonucleoprotein complex
G0003729molecular_functionmRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005737cellular_componentcytoplasm
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0017148biological_processnegative regulation of translation
G0019843molecular_functionrRNA binding
G0022625cellular_componentcytosolic large ribosomal subunit
G0043229cellular_componentintracellular organelle
G1990904cellular_componentribonucleoprotein complex
H0003735molecular_functionstructural constituent of ribosome
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0015934cellular_componentlarge ribosomal subunit
H0019843molecular_functionrRNA binding
H0022625cellular_componentcytosolic large ribosomal subunit
H0070180molecular_functionlarge ribosomal subunit rRNA binding
H1990904cellular_componentribonucleoprotein complex
I0003735molecular_functionstructural constituent of ribosome
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0015934cellular_componentlarge ribosomal subunit
I0019843molecular_functionrRNA binding
I0022625cellular_componentcytosolic large ribosomal subunit
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0019843molecular_functionrRNA binding
J0022625cellular_componentcytosolic large ribosomal subunit
J1990904cellular_componentribonucleoprotein complex
K0003735molecular_functionstructural constituent of ribosome
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K0022625cellular_componentcytosolic large ribosomal subunit
K1990904cellular_componentribonucleoprotein complex
L0003735molecular_functionstructural constituent of ribosome
L0005737cellular_componentcytoplasm
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0008097molecular_function5S rRNA binding
L0019843molecular_functionrRNA binding
L0022625cellular_componentcytosolic large ribosomal subunit
L0043229cellular_componentintracellular organelle
L1990904cellular_componentribonucleoprotein complex
M0003735molecular_functionstructural constituent of ribosome
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0019843molecular_functionrRNA binding
M0022625cellular_componentcytosolic large ribosomal subunit
M1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0019843molecular_functionrRNA binding
N0022625cellular_componentcytosolic large ribosomal subunit
N1990904cellular_componentribonucleoprotein complex
O0003723molecular_functionRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0019843molecular_functionrRNA binding
O0043229cellular_componentintracellular organelle
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015934cellular_componentlarge ribosomal subunit
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0019843molecular_functionrRNA binding
Q0022625cellular_componentcytosolic large ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0003723molecular_functionRNA binding
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0019843molecular_functionrRNA binding
R0022625cellular_componentcytosolic large ribosomal subunit
R1990904cellular_componentribonucleoprotein complex
S0000049molecular_functiontRNA binding
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0008097molecular_function5S rRNA binding
S0019843molecular_functionrRNA binding
S0022625cellular_componentcytosolic large ribosomal subunit
S1990904cellular_componentribonucleoprotein complex
T0000049molecular_functiontRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0019843molecular_functionrRNA binding
T0022625cellular_componentcytosolic large ribosomal subunit
T1990904cellular_componentribonucleoprotein complex
U0003735molecular_functionstructural constituent of ribosome
U0005840cellular_componentribosome
U0006412biological_processtranslation
U1990904cellular_componentribonucleoprotein complex
V0003735molecular_functionstructural constituent of ribosome
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0019843molecular_functionrRNA binding
V0022625cellular_componentcytosolic large ribosomal subunit
V1990904cellular_componentribonucleoprotein complex
W0003735molecular_functionstructural constituent of ribosome
W0005840cellular_componentribosome
W0006412biological_processtranslation
W0015934cellular_componentlarge ribosomal subunit
W0019843molecular_functionrRNA binding
W0022625cellular_componentcytosolic large ribosomal subunit
W1990904cellular_componentribonucleoprotein complex
Z0003735molecular_functionstructural constituent of ribosome
Z0005840cellular_componentribosome
Z0006412biological_processtranslation
Z0015934cellular_componentlarge ribosomal subunit
Z0019843molecular_functionrRNA binding
Z0046872molecular_functionmetal ion binding
Z1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MG A 301
ChainResidue
AHIS233
AGLY234
XA2577

site_idAC2
Number of Residues3
Detailsbinding site for residue MG K 201
ChainResidue
KHIS3
KLYS5
XA2795

site_idAC3
Number of Residues1
Detailsbinding site for residue MG K 202
ChainResidue
KGLY4

site_idAC4
Number of Residues1
Detailsbinding site for residue MG M 201
ChainResidue
MASN58

site_idAC5
Number of Residues1
Detailsbinding site for residue MG M 202
ChainResidue
MASN58

site_idAC6
Number of Residues2
Detailsbinding site for residue MG X 2901
ChainResidue
NARG58
XA1167

site_idAC7
Number of Residues6
Detailsbinding site for residue ERY X 2902
ChainResidue
XC759
XA2041
XA2045
XG2484
XC2589
XU2590

site_idAC8
Number of Residues2
Detailsbinding site for residue MG X 2903
ChainResidue
XA1681
XA1682

site_idAC9
Number of Residues2
Detailsbinding site for residue MG X 2904
ChainResidue
XG1337
XC1340

site_idAD1
Number of Residues2
Detailsbinding site for residue MG X 2905
ChainResidue
XA1681
XA1682

site_idAD2
Number of Residues1
Detailsbinding site for residue MG X 2906
ChainResidue
XG2699

site_idAD3
Number of Residues2
Detailsbinding site for residue MG X 2908
ChainResidue
XA2684
XA2685

site_idAD4
Number of Residues3
Detailsbinding site for residue MG X 2909
ChainResidue
XA1281
XC1989
XA2031

site_idAD5
Number of Residues2
Detailsbinding site for residue MG X 2910
ChainResidue
XU2057
XG2218

site_idAD6
Number of Residues2
Detailsbinding site for residue MG X 2911
ChainResidue
XA991
XC993

site_idAD7
Number of Residues3
Detailsbinding site for residue MG X 2912
ChainResidue
XA1288
XA1289
XG1662

site_idAD8
Number of Residues2
Detailsbinding site for residue MG X 2913
ChainResidue
XG2044
XG2481

site_idAD9
Number of Residues3
Detailsbinding site for residue MG X 2914
ChainResidue
XA2690
XA2692
XG2694

site_idAE1
Number of Residues3
Detailsbinding site for residue MG X 2915
ChainResidue
XG1827
XA1883
XA1953

site_idAE2
Number of Residues2
Detailsbinding site for residue MG X 2916
ChainResidue
XC1765
XA1777

site_idAE3
Number of Residues2
Detailsbinding site for residue MG X 2917
ChainResidue
XC583
XG2018

site_idAE4
Number of Residues1
Detailsbinding site for residue MG X 2918
ChainResidue
XG2567

site_idAE5
Number of Residues3
Detailsbinding site for residue MG X 2919
ChainResidue
XU557
XG558
XG560

site_idAE6
Number of Residues1
Detailsbinding site for residue MG X 2920
ChainResidue
XA576

site_idAE7
Number of Residues2
Detailsbinding site for residue MG X 2921
ChainResidue
XC1979
XA1980

site_idAE8
Number of Residues2
Detailsbinding site for residue MG X 2922
ChainResidue
XG2661
XA2701

site_idAE9
Number of Residues3
Detailsbinding site for residue MG X 2923
ChainResidue
XU800
XA802
XC803

site_idAF1
Number of Residues1
Detailsbinding site for residue MG X 2924
ChainResidue
XC2008

site_idAF2
Number of Residues1
Detailsbinding site for residue MG X 2925
ChainResidue
XG2656

site_idAF3
Number of Residues2
Detailsbinding site for residue MG X 2927
ChainResidue
XA1278
XU2594

site_idAF4
Number of Residues1
Detailsbinding site for residue MG X 2928
ChainResidue
XU974

site_idAF5
Number of Residues4
Detailsbinding site for residue MG X 2929
ChainResidue
XG1284
XA1285
XG1664
XC1665

site_idAF6
Number of Residues2
Detailsbinding site for residue MG X 2932
ChainResidue
XG540
XU2005

site_idAF7
Number of Residues3
Detailsbinding site for residue MG X 2934
ChainResidue
XC1311
XG1312
XU1656

site_idAF8
Number of Residues2
Detailsbinding site for residue MG X 2935
ChainResidue
XC1687
XU1688

site_idAF9
Number of Residues2
Detailsbinding site for residue MG X 2936
ChainResidue
XC541
XC2019

site_idAG1
Number of Residues1
Detailsbinding site for residue MG X 2937
ChainResidue
XA2045

site_idAG2
Number of Residues1
Detailsbinding site for residue MG X 2938
ChainResidue
XA1693

site_idAG3
Number of Residues3
Detailsbinding site for residue MG X 2939
ChainResidue
XC574
XU823
XG1266

site_idAG4
Number of Residues4
Detailsbinding site for residue MG X 2940
ChainResidue
XC2486
XC2552
XG2553
XC2554

site_idAG5
Number of Residues2
Detailsbinding site for residue MG X 2941
ChainResidue
XG1767
XA1964

site_idAG6
Number of Residues4
Detailsbinding site for residue MG X 2942
ChainResidue
AALA225
XA796
XA797
XA2568

site_idAG7
Number of Residues3
Detailsbinding site for residue MG X 2943
ChainResidue
XG798
XG805
XC2419

site_idAG8
Number of Residues2
Detailsbinding site for residue MG X 2944
ChainResidue
XG2039
XA2040

site_idAG9
Number of Residues2
Detailsbinding site for residue MG X 2945
ChainResidue
XA2834
XG2832

site_idAH1
Number of Residues2
Detailsbinding site for residue MG X 2946
ChainResidue
XG1932
XU1938

site_idAH2
Number of Residues3
Detailsbinding site for residue MG X 2947
ChainResidue
XU753
XA1774
XA1775

site_idAH3
Number of Residues4
Detailsbinding site for residue MG X 2948
ChainResidue
XA1686
XC1687
XU1688
XG2529

site_idAH4
Number of Residues1
Detailsbinding site for residue MG X 2949
ChainResidue
XC1348

site_idAH5
Number of Residues3
Detailsbinding site for residue MG X 2950
ChainResidue
XG2036
XG2555
XA2556

site_idAH6
Number of Residues1
Detailsbinding site for residue MG X 2952
ChainResidue
XG1664

site_idAH7
Number of Residues3
Detailsbinding site for residue MG X 2953
ChainResidue
XC2049
XC2227
XU2228

site_idAH8
Number of Residues2
Detailsbinding site for residue MG X 2954
ChainResidue
XA797
XG2567

site_idAH9
Number of Residues2
Detailsbinding site for residue MG X 2955
ChainResidue
XU2594
XC2595

site_idAI1
Number of Residues2
Detailsbinding site for residue MG X 2956
ChainResidue
XA2690
XA2692

site_idAI2
Number of Residues2
Detailsbinding site for residue MG X 2957
ChainResidue
XG687
XA815

site_idAI3
Number of Residues2
Detailsbinding site for residue MG X 2958
ChainResidue
XC2431
XG2473

site_idAI4
Number of Residues2
Detailsbinding site for residue MG X 2959
ChainResidue
XC583
XG586

site_idAI5
Number of Residues2
Detailsbinding site for residue MG X 2960
ChainResidue
XG844
XA956

site_idAI6
Number of Residues1
Detailsbinding site for residue MG X 2961
ChainResidue
XA984

site_idAI7
Number of Residues4
Detailsbinding site for residue MG X 2962
ChainResidue
XG676
XG677
XG951
XG1206

site_idAI8
Number of Residues3
Detailsbinding site for residue MG X 2963
ChainResidue
XC959
XU973
XU974

site_idAI9
Number of Residues1
Detailsbinding site for residue MG X 2964
ChainResidue
XG2847

site_idAJ1
Number of Residues2
Detailsbinding site for residue MG X 2965
ChainResidue
XG2018
XG2021

Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtshaikra.DGstirFdrNaaVI
ChainResidueDetails
HALA72-ILE98

site_idPS01015
Number of Residues16
DetailsRIBOSOMAL_L19 Ribosomal protein L19 signature. IvErGKVR.RAKLYYLR
ChainResidueDetails
MILE93-ARG108

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDtViVLsGkhKGqt.GkV
ChainResidueDetails
RGLY19-VAL36

site_idPS00784
Number of Residues20
DetailsRIBOSOMAL_L34 Ribosomal protein L34 signature. KRTYQpnnrkRakth.GFraR
ChainResidueDetails
2LYS2-ARG21

site_idPS00586
Number of Residues12
DetailsRIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRgGKIYIRIFP
ChainResidueDetails
JARG60-PRO71

site_idPS00701
Number of Residues12
DetailsRIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGaveyW
ChainResidueDetails
JARG83-TRP94

site_idPS01167
Number of Residues23
DetailsRIBOSOMAL_L17 Ribosomal protein L17 signature. IqTTltKaKelrpfvEqLITtAK
ChainResidueDetails
KILE34-LYS56

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PhqRGSAmNPvD
ChainResidueDetails
APRO219-ASP230

site_idPS00582
Number of Residues20
DetailsRIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNrrntQakLElkKYD
ChainResidueDetails
1TYR22-ASP41

site_idPS00783
Number of Residues23
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. VFGMLPkgrq.GRamhtrLkVYaG
ChainResidueDetails
GVAL131-GLY153

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FaegekiDatGtSkGKGtqGvmkR
ChainResidueDetails
BPHE96-ARG119

site_idPS00936
Number of Residues27
DetailsRIBOSOMAL_L35 Ribosomal protein L35 signature. KTHkMAkRRIkitgtgkvmafksgk.RH
ChainResidueDetails
3LYS5-HIS31

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. QPHRVRqLRREVAQL
ChainResidueDetails
VGLN39-LEU53

site_idPS00475
Number of Residues31
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KLLAsGeIsra..VtVhvdaASaaAikaVeaaG
ChainResidueDetails
ILYS107-GLY137

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAIVRLAegqsieaL
ChainResidueDetails
QLYS76-LEU91

site_idPS00831
Number of Residues15
DetailsRIBOSOMAL_L27 Ribosomal protein L27 signature. GnILvRQRGtkfkaG
ChainResidueDetails
TGLY34-GLY48

site_idPS00937
Number of Residues17
DetailsRIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRrLWIQRINagaR
ChainResidueDetails
NLYS54-ARG70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsZN_FING: C4-type => ECO:0000305
ChainResidueDetails
ZCYS33-CYS49

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
ZCYS33
ZCYS36
ZCYS46
ZCYS49

219140

PDB entries from 2024-05-01

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