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3QE9

Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(Y, Z)
Exonuclease 1polymer35239515.92UniProt (Q9UQ84)
Pfam (PF00752)
Pfam (PF00867)
Homo sapiens (human)hExo1, Exonuclease I, hExoI
2B, E
(C, A)
DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3')polymer133951.62
3C, F
(D, B)
DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3')polymer103045.02
4G, I
(Y, Z)
POTASSIUM IONnon-polymer39.12Chemie (K)
5H, J
(Y, Z)
CALCIUM IONnon-polymer40.12Chemie (CA)
6K, L, M, N, O...
(Y, C, D, Z, A...)
waterwater18.0312Chemie (HOH)
Sequence modifications
Y, Z: 1 - 352 (UniProt: Q9UQ84)
PDBExternal DatabaseDetails
Ala 173Asp 173engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight93025.0
Non-Polymers*Number of molecules4
Total formula weight158.4
All*Total formula weight93183.3
*Water molecules are not included.

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PDB entries from 2025-12-17

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