3J6B
Structure of the yeast mitochondrial large ribosomal subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 21S ribosomal RNA | polymer | 3296 | 1057805.4 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 2 | B | 54S ribosomal protein RML2, mitochondrial | polymer | 393 | 43870.0 | 1 | UniProt (P32611) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae (yeast) | L2 |
| 3 | C | 54S ribosomal protein L9, mitochondrial | polymer | 269 | 29843.5 | 1 | UniProt (P31334) Pfam (PF00297) In PDB | Saccharomyces cerevisiae (yeast) | YmL9 |
| 4 | D | 54S ribosomal protein YmL6, mitochondrial | polymer | 286 | 32014.6 | 1 | UniProt (P51998) Pfam (PF00573) In PDB | Saccharomyces cerevisiae (yeast) | |
| 5 | E | 54S ribosomal protein L7, mitochondrial | polymer | 292 | 33152.0 | 1 | UniProt (P36519) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae (yeast) | YmL5, YmL7 |
| 6 | F | 54S ribosomal protein L6, mitochondrial | polymer | 214 | 23926.9 | 1 | UniProt (P32904) Pfam (PF00347) In PDB | Saccharomyces cerevisiae (yeast) | YmL16 |
| 7 | G | 54S ribosomal protein L50, mitochondrial | polymer | 139 | 16313.8 | 1 | UniProt (P53724) In PDB | Saccharomyces cerevisiae (yeast) | |
| 8 | H | 54S ribosomal protein L23, mitochondrial | polymer | 163 | 18499.5 | 1 | UniProt (Q12487) Pfam (PF00572) In PDB | Saccharomyces cerevisiae (yeast) | YmL23 |
| 9 | I | 54S ribosomal protein L38, mitochondrial | polymer | 138 | 14929.7 | 1 | UniProt (P35996) Pfam (PF00238) In PDB | Saccharomyces cerevisiae (yeast) | YmL38, 54S ribosomal protein L34, mitochondrial, YmL34 |
| 10 | J | 54S ribosomal protein L10, mitochondrial | polymer | 322 | 36414.5 | 1 | UniProt (P36520) Pfam (PF00828) In PDB | Saccharomyces cerevisiae (yeast) | YmL10/YmL18 |
| 11 | K | 54S ribosomal protein L16, mitochondrial | polymer | 232 | 26569.0 | 1 | UniProt (P38064) Pfam (PF00252) In PDB | Saccharomyces cerevisiae (yeast) | YmL47 |
| 12 | L | 54S ribosomal protein L8, mitochondrial | polymer | 238 | 26989.4 | 1 | UniProt (P22353) Pfam (PF01196) Pfam (PF18502) In PDB | Saccharomyces cerevisiae (yeast) | YmL8 |
| 13 | M | 54S ribosomal protein IMG1, mitochondrial | polymer | 169 | 19428.8 | 1 | UniProt (P25626) Pfam (PF01245) In PDB | Saccharomyces cerevisiae (yeast) | Integrity of mitochondrial genome protein 1, PetCR46 |
| 14 | N | 54S ribosomal protein L49, mitochondrial | polymer | 161 | 18420.5 | 1 | UniProt (P40858) Pfam (PF00829) In PDB | Saccharomyces cerevisiae (yeast) | YmL49 |
| 15 | O | 54S ribosomal protein L22, mitochondrial | polymer | 309 | 34957.4 | 1 | UniProt (P53881) Pfam (PF00237) In PDB | Saccharomyces cerevisiae (yeast) | |
| 16 | P | 54S ribosomal protein L41, mitochondrial | polymer | 263 | 30616.2 | 1 | UniProt (P32387) Pfam (PF00276) In PDB | Saccharomyces cerevisiae (yeast) | YmL41 |
| 17 | Q | 54S ribosomal protein L40, mitochondrial | polymer | 297 | 33808.0 | 1 | UniProt (P36534) In PDB | Saccharomyces cerevisiae (yeast) | YmL40 |
| 18 | R | 54S ribosomal protein L2, mitochondrial | polymer | 371 | 43310.7 | 1 | UniProt (P12687) Pfam (PF01016) Pfam (PF18471) In PDB | Saccharomyces cerevisiae (yeast) | YMR6, YmL2 |
| 19 | S | 54S ribosomal protein L24, mitochondrial | polymer | 258 | 30109.3 | 1 | UniProt (P36525) Pfam (PF00830) In PDB | Saccharomyces cerevisiae (yeast) | YmL14/YmL24 |
| 20 | T | 54S ribosomal protein L4, mitochondrial | polymer | 319 | 37019.9 | 1 | UniProt (P36517) Pfam (PF06984) In PDB | Saccharomyces cerevisiae (yeast) | YmL4 |
| 21 | U | 54S ribosomal protein L33, mitochondrial | polymer | 86 | 9549.3 | 1 | UniProt (P20084) Pfam (PF00327) In PDB | Saccharomyces cerevisiae (yeast) | YmL33 |
| 22 | V | 54S ribosomal protein L36, mitochondrial | polymer | 177 | 20125.8 | 1 | UniProt (P36531) Pfam (PF21492) In PDB | Saccharomyces cerevisiae (yeast) | YmL36 |
| 23 | W | 54S ribosomal protein L32, mitochondrial | polymer | 183 | 21483.1 | 1 | UniProt (P25348) Pfam (PF01783) In PDB | Saccharomyces cerevisiae (yeast) | YmL32 |
| 24 | X | 54S ribosomal protein L39, mitochondrial | polymer | 70 | 7992.6 | 1 | UniProt (P36533) In PDB | Saccharomyces cerevisiae (yeast) | YmL39 |
| 25 | Y | 54S ribosomal protein L34, mitochondrial | polymer | 105 | 12054.3 | 1 | UniProt (Q04598) Pfam (PF00468) In PDB | Saccharomyces cerevisiae (yeast) | L34mt |
| 26 | Z | mitochondrial ribosomal protein YNL122C | polymer | 115 | 13276.7 | 1 | UniProt (P53921) Pfam (PF01632) In PDB | Saccharomyces cerevisiae (yeast) | |
| 27 | 0 | 54S ribosomal protein RTC6, mitochondrial | polymer | 93 | 10719.0 | 1 | UniProt (O14464) Pfam (PF00444) In PDB | Saccharomyces cerevisiae (yeast) | Restriction of telomere capping protein 6, Translation associated element 4 |
| 28 | 1 | 54S ribosomal protein L35, mitochondrial | polymer | 367 | 42886.1 | 1 | UniProt (Q06678) Pfam (PF01161) In PDB | Saccharomyces cerevisiae (yeast) | YmL35 |
| 29 | 2 | 54S ribosomal protein L28, mitochondrial | polymer | 147 | 17373.3 | 1 | UniProt (P36527) Pfam (PF09812) In PDB | Saccharomyces cerevisiae (yeast) | YmL28 |
| 30 | 3 | 54S ribosomal protein L27, mitochondrial | polymer | 146 | 16521.1 | 1 | UniProt (P36526) Pfam (PF09809) In PDB | Saccharomyces cerevisiae (yeast) | YmL27 |
| 31 | 4 | 54S ribosomal protein L51, mitochondrial | polymer | 140 | 16153.7 | 1 | UniProt (Q06090) Pfam (PF05047) In PDB | Saccharomyces cerevisiae (yeast) | |
| 32 | 5 | 54S ribosomal protein L3, mitochondrial | polymer | 390 | 44058.7 | 1 | UniProt (P36516) Pfam (PF00636) Pfam (PF00035) In PDB | Saccharomyces cerevisiae (yeast) | YmL3 |
| 33 | 6 | 54S ribosomal protein L17, mitochondrial | polymer | 281 | 32261.7 | 1 | UniProt (P36528) Pfam (PF11788) In PDB | Saccharomyces cerevisiae (yeast) | YmL17/YmL30 |
| 34 | 7 | 54S ribosomal protein IMG2, mitochondrial | polymer | 146 | 16406.2 | 1 | UniProt (P25642) Pfam (PF05046) In PDB | Saccharomyces cerevisiae (yeast) | Integrity of mitochondrial genome protein 2 |
| 35 | 8 | 54S ribosomal protein L13, mitochondrial | polymer | 264 | 30317.4 | 1 | UniProt (Q02204) Pfam (PF10501) In PDB | Saccharomyces cerevisiae (yeast) | YmL13 |
| 36 | 9 | 54S ribosomal protein L15, mitochondrial | polymer | 253 | 28148.5 | 1 | UniProt (P36523) Pfam (PF00636) In PDB | Saccharomyces cerevisiae (yeast) | YmL15 |
| 37 | a | 54S ribosomal protein L20, mitochondrial | polymer | 195 | 22431.9 | 1 | UniProt (P22354) Pfam (PF12824) In PDB | Saccharomyces cerevisiae (yeast) | YmL20 |
| 38 | b | 54S ribosomal protein L25, mitochondrial | polymer | 157 | 18627.0 | 1 | UniProt (P23369) Pfam (PF18126) In PDB | Saccharomyces cerevisiae (yeast) | YmL25 |
| 39 | c | 54S ribosomal protein L31, mitochondrial | polymer | 131 | 15555.5 | 1 | UniProt (P14063) Pfam (PF09784) In PDB | Saccharomyces cerevisiae (yeast) | YmL31 |
| 40 | d | Mitochondrial homologous recombination protein 1 | polymer | 226 | 26937.8 | 1 | UniProt (Q06630) Pfam (PF12829) In PDB | Saccharomyces cerevisiae (yeast) | Cross-linked transcription component 1 |
| 41 | e | E-site tRNA | polymer | 20 | 6451.9 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 42 | A, N | MAGNESIUM ION | non-polymer | 24.3 | 110 | Chemie (MG) | |||
| 43 | B | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 44 | W, 0 | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
9: 1 - 253 (UniProt: P36523)
| PDB | External Database | Details |
|---|---|---|
| Gly 169 | Asp 169 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 41 |
| Total formula weight | 2037330.6 | |
| Non-Polymers* | Number of molecules | 113 |
| Total formula weight | 2827.4 | |
| All* | Total formula weight | 2040157.9 |
