28LU
Structure of the Chlamydomonas reinhardtii chlororibosome with factor pY
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (a) | Ribosomal protein S1 homologue | polymer | 436 | 48345.2 | 1 | UniProt (Q70DX8) | Chlamydomonas reinhardtii | |
| 2 | B (d) | Small ribosomal subunit protein uS4c | polymer | 257 | 30082.1 | 1 | UniProt (P48270) | Chlamydomonas reinhardtii | 30S ribosomal protein S4,chloroplastic |
| 3 | C (f) | bS6c | polymer | 171 | 19097.0 | 1 | UniProt (A8J5Y7) | Chlamydomonas reinhardtii | |
| 4 | D (g) | Small ribosomal subunit protein uS7c | polymer | 168 | 19163.8 | 1 | UniProt (P48267) | Chlamydomonas reinhardtii | 30S ribosomal protein S7,chloroplastic |
| 5 | E (h) | Small ribosomal subunit protein uS8c | polymer | 141 | 15916.6 | 1 | UniProt (P59775) | Chlamydomonas reinhardtii | 30S ribosomal protein S8,chloroplastic |
| 6 | F (j) | Small ribosomal subunit protein uS10 domain-containing protein | polymer | 169 | 18736.7 | 1 | UniProt (A8IWQ1) | Chlamydomonas reinhardtii | |
| 7 | G (k) | Small ribosomal subunit protein uS11c | polymer | 130 | 14260.9 | 1 | UniProt (Q7YKX3) | Chlamydomonas reinhardtii | 30S ribosomal protein S11,chloroplastic |
| 8 | H (l) | Small ribosomal subunit protein uS12c | polymer | 133 | 14637.4 | 1 | UniProt (P14149) | Chlamydomonas reinhardtii | 30S ribosomal protein S12,chloroplastic |
| 9 | I (m) | uS13c | polymer | 164 | 18561.7 | 1 | UniProt (A8JDP6) | Chlamydomonas reinhardtii | |
| 10 | J (n) | Small ribosomal subunit protein uS14c | polymer | 100 | 11776.1 | 1 | UniProt (Q9GGE2) | Chlamydomonas reinhardtii | 30S ribosomal protein S14,chloroplastic |
| 11 | K (o) | 30S ribosomal protein S15 | polymer | 141 | 15817.3 | 1 | UniProt (A8HWZ8) | Chlamydomonas reinhardtii | |
| 12 | L (p) | 30S ribosomal protein S16, chloroplastic | polymer | 128 | 14474.1 | 1 | UniProt (A8JDN8) | Chlamydomonas reinhardtii | |
| 13 | M (q) | Small ribosomal subunit protein uS17c | polymer | 105 | 11767.7 | 1 | UniProt (A8JGS2) | Chlamydomonas reinhardtii | |
| 14 | N (r) | Small ribosomal subunit protein bS18c | polymer | 137 | 16315.8 | 1 | UniProt (O20032) | Chlamydomonas reinhardtii | 30S ribosomal protein S18,chloroplastic |
| 15 | O (s) | Small ribosomal subunit protein uS19c | polymer | 92 | 10463.5 | 1 | UniProt (P59776) | Chlamydomonas reinhardtii | 30S ribosomal protein S19,chloroplastic |
| 16 | P (t) | bS20c | polymer | 166 | 18285.6 | 1 | UniProt (A8JDN4) | Chlamydomonas reinhardtii | |
| 17 | Q (u) | bS21c | polymer | 184 | 20793.3 | 1 | UniProt (A8HPN4) | Chlamydomonas reinhardtii | |
| 18 | R (v) | 30S ribosomal protein 3, chloroplastic | polymer | 298 | 33397.2 | 1 | UniProt (A8I8A3) | Chlamydomonas reinhardtii | |
| 19 | S (x) | cS26/PSRP8 | polymer | 120 | 12985.0 | 1 | UniProt (A8I8A6) | Chlamydomonas reinhardtii | |
| 20 | T (w) | Plastid-specific ribosomal protein-7 | polymer | 560 | 60136.9 | 1 | UniProt (Q5QEB1) | Chlamydomonas reinhardtii | |
| 21 | U (2) | 16S rRNA | polymer | 1470 | 476372.6 | 1 | GenBank (41179002) | Chlamydomonas reinhardtii | |
| 22 | V (b) | Small ribosomal subunit protein uS2c | polymer | 910 | 102698.5 | 1 | UniProt (A0A218N8X3) | Chlamydomonas reinhardtii | |
| 23 | W (c) | Small ribosomal subunit protein uS3c | polymer | 712 | 82015.9 | 1 | UniProt (Q08365) | Chlamydomonas reinhardtii | 30S ribosomal protein S3,chloroplastic,ORF 712 |
| 24 | X (e) | uS5c | polymer | 673 | 72090.7 | 1 | UniProt (A8J8M5) | Chlamydomonas reinhardtii | |
| 25 | Y (i) | Small ribosomal subunit protein uS9c | polymer | 191 | 21062.2 | 1 | UniProt (O20029) | Chlamydomonas reinhardtii | 30S ribosomal protein S9,chloroplastic |
| 26 | Z (y) | Sigma 54 modulation/S30EA ribosomal protein C-terminal domain-containing protein | polymer | 286 | 31825.6 | 1 | UniProt (A0A2K3DSW0) | Chlamydomonas reinhardtii | |
| 27 | AA (0) | cL38/PSRP6 | polymer | 66 | 7215.3 | 1 | UniProt (A0A835SZL0) | Chlamydomonas reinhardtii | |
| 28 | BA (3) | 5S rRNA | polymer | 121 | 38858.9 | 1 | GenBank (11422) | Chlamydomonas reinhardtii | |
| 29 | CA (5) | 3S rRNA | polymer | 47 | 15149.1 | 1 | Chlamydomonas reinhardtii | ||
| 30 | DA (6) | bL33c | polymer | 101 | 11431.4 | 1 | UniProt (A8I1D3) | Chlamydomonas reinhardtii | |
| 31 | EA (7) | bL34c | polymer | 124 | 12987.5 | 1 | UniProt (A8HQG3) | Chlamydomonas reinhardtii | |
| 32 | FA (8) | 50S ribosomal protein L35 | polymer | 114 | 12106.2 | 1 | UniProt (A8JEP1) | Chlamydomonas reinhardtii | |
| 33 | GA (9) | Large ribosomal subunit protein bL36c | polymer | 37 | 4273.3 | 1 | UniProt (P59774) | Chlamydomonas reinhardtii | 50S ribosomal protein L36,chloroplastic |
| 34 | HA (B) | Large ribosomal subunit protein uL2c | polymer | 278 | 30955.8 | 1 | UniProt (Q8HTL2) | Chlamydomonas reinhardtii | 50S ribosomal protein L2,chloroplastic |
| 35 | IA (C) | Large ribosomal subunit protein uL3c | polymer | 259 | 27878.4 | 1 | UniProt (A8JE35) | Chlamydomonas reinhardtii | |
| 36 | JA (D) | Large ribosomal subunit protein uL4c | polymer | 243 | 25659.5 | 1 | UniProt (Q84U22) | Chlamydomonas reinhardtii | 50S ribosomal protein L4,chloroplastic |
| 37 | KA (E) | Large ribosomal subunit protein uL5c | polymer | 179 | 20267.7 | 1 | UniProt (Q8HTL1) | Chlamydomonas reinhardtii | 50S ribosomal protein L5,chloroplastic |
| 38 | LA (F) | Plastid ribosomal protein L6 | polymer | 207 | 22275.3 | 1 | UniProt (A8J503) | Chlamydomonas reinhardtii | |
| 39 | MA (G) | Large ribosomal subunit protein bL9c | polymer | 200 | 22043.7 | 1 | UniProt (A0A2K3D5T7) | Chlamydomonas reinhardtii | 50S ribosomal protein L9,chloroplastic,CL9 |
| 40 | NA (H) | uL10c | polymer | 235 | 25941.2 | 1 | UniProt (A8HVP7) | Chlamydomonas reinhardtii | |
| 41 | OA (I) | Large ribosomal subunit protein uL11c | polymer | 176 | 18563.0 | 1 | UniProt (A8ICE4) | Chlamydomonas reinhardtii | 50S ribosomal protein L11,chloroplastic,CL11 |
| 42 | PA (J) | uL13c | polymer | 225 | 24590.5 | 1 | UniProt (A8HWZ6) | Chlamydomonas reinhardtii | |
| 43 | QA (K) | Large ribosomal subunit protein uL14c | polymer | 122 | 13466.8 | 1 | UniProt (P11094) | Chlamydomonas reinhardtii | 50S ribosomal protein L14,chloroplastic |
| 44 | RA (L) | uL15c | polymer | 241 | 25570.5 | 1 | Chlamydomonas reinhardtii | ||
| 45 | SA (M) | Large ribosomal subunit protein uL16c | polymer | 136 | 15500.4 | 1 | UniProt (P05726) | Chlamydomonas reinhardtii | 50S ribosomal protein L16,chloroplastic |
| 46 | TA (N) | Large ribosomal subunit protein bL17c | polymer | 173 | 19188.5 | 1 | UniProt (A8I3M4) | Chlamydomonas reinhardtii | 50S ribosomal protein L17,chloroplastic,CL17 |
| 47 | UA (O) | Large ribosomal subunit protein uL18c | polymer | 145 | 15818.3 | 1 | UniProt (A8HNJ8) | Chlamydomonas reinhardtii | CL18 |
| 48 | VA (P) | bL19c | polymer | 153 | 16626.4 | 1 | UniProt (A8IW44) | Chlamydomonas reinhardtii | |
| 49 | WA (Q) | Large ribosomal subunit protein bL20c | polymer | 112 | 13578.1 | 1 | UniProt (P26565) | Chlamydomonas reinhardtii | 50S ribosomal protein L20,chloroplastic |
| 50 | XA (R) | bL21c | polymer | 179 | 19516.9 | 1 | UniProt (A8IP00) | Chlamydomonas reinhardtii | |
| 51 | YA (S) | Large ribosomal subunit protein uL22c | polymer | 175 | 18959.3 | 1 | UniProt (Q84U21) | Chlamydomonas reinhardtii | 50S ribosomal protein L22,chloroplastic |
| 52 | ZA (T) | uL23c,Large ribosomal subunit protein uL23c | polymer | 111 | 12565.8 | 1 | UniProt (Q8HTL3) | Chlamydomonas reinhardtii | 50S ribosomal protein L23,chloroplastic |
| 53 | AB (U) | KOW domain-containing protein | polymer | 170 | 18307.6 | 1 | UniProt (A8J9D9) | Chlamydomonas reinhardtii | |
| 54 | BB (V) | bL27c | polymer | 161 | 17208.8 | 1 | UniProt (A8INR7) | Chlamydomonas reinhardtii | |
| 55 | CB (W) | Large ribosomal subunit protein bL28c | polymer | 195 | 21945.6 | 1 | UniProt (A8HWS8) | Chlamydomonas reinhardtii | |
| 56 | DB (X) | uL29c | polymer | 134 | 14965.4 | 1 | UniProt (A8HXM1) | Chlamydomonas reinhardtii | |
| 57 | EB (Z) | bL32c | polymer | 98 | 10639.3 | 1 | UniProt (A8IUC3) | Chlamydomonas reinhardtii | |
| 58 | FB (Y) | 50S ribosomal protein L31 | polymer | 136 | 14777.9 | 1 | UniProt (A8J3Z3) | Chlamydomonas reinhardtii | |
| 59 | GB (1) | 23S rRNA | polymer | 2375 | 769308.6 | 1 | Chlamydomonas reinhardtii | ||
| 60 | HB (4) | 7S rRNA | polymer | 272 | 88325.7 | 1 | Chlamydomonas reinhardtii | ||
| 61 | AD, AE, AF, AJ, AK... (2, 1, U, 4) | POTASSIUM ION | non-polymer | 39.1 | 138 | Chemie (K) PubChem (813) | |||
| 62 | AC, AG, AH, AI, AM... (2, 3, 1, 5, D...) | MAGNESIUM ION | non-polymer | 24.3 | 322 | Chemie (MG) PubChem (888) |
Sequence modifications
u: 530 - 713 (UniProt: A8HPN4)
2: 3 - 1474 (GenBank: 41179002)
y: 1 - 286 (UniProt: A0A2K3DSW0)
0: 1 - 66 (UniProt: A0A835SZL0)
T: -15 - 0 (PDB: 28LU)
T: 1 - 95 (UniProt: Q8HTL3)
| PDB | External Database | Details |
|---|---|---|
| Arg 652 | Asp 123 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | C 38626 | deletion |
| - | A 38627 | deletion |
| A 372 | - | insertion |
| G 373 | - | insertion |
| G 871 | - | insertion |
| G 872 | - | insertion |
| 2mg 912 | A 39457 | conflict |
| A 982 | - | insertion |
| C 983 | - | insertion |
| C 1200 | - | insertion |
| A 1218 | C 39760 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 236 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ser 17 | Thr 17 | conflict |
| Arg 37 | Ala 37 | conflict |
| Ala 38 | Ser 38 | conflict |
| Asn 41 | Arg 41 | conflict |
| Ala 63 | Gly 63 | conflict |
T: 1 - 95 (UniProt: Q8HTL3)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2657545.8 | |
| Non-Polymers* | Number of molecules | 460 |
| Total formula weight | 13221.7 | |
| All* | Total formula weight | 2670767.5 |
