Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

28LU

Structure of the Chlamydomonas reinhardtii chlororibosome with factor pY

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
6	0005737	cellular_component	cytoplasm
8	0003735	molecular_function	structural constituent of ribosome
8	0005762	cellular_component	mitochondrial large ribosomal subunit
8	0006412	biological_process	translation
9	0005737	cellular_component	cytoplasm
9	0006412	biological_process	translation
9	0008270	molecular_function	zinc ion binding
9	0009507	cellular_component	chloroplast
9	0015934	cellular_component	large ribosomal subunit
9	0019843	molecular_function	rRNA binding
a	0003729	molecular_function	mRNA binding
a	0003735	molecular_function	structural constituent of ribosome
a	0006412	biological_process	translation
B	0003735	molecular_function	structural constituent of ribosome
B	0005762	cellular_component	mitochondrial large ribosomal subunit
B	0006412	biological_process	translation
B	0009507	cellular_component	chloroplast
B	0015934	cellular_component	large ribosomal subunit
B	0019843	molecular_function	rRNA binding
c	0003735	molecular_function	structural constituent of ribosome
c	0006412	biological_process	translation
c	0009507	cellular_component	chloroplast
c	0022627	cellular_component	cytosolic small ribosomal subunit
C	0003735	molecular_function	structural constituent of ribosome
d	0003735	molecular_function	structural constituent of ribosome
d	0006412	biological_process	translation
d	0009507	cellular_component	chloroplast
d	0015935	cellular_component	small ribosomal subunit
d	0019843	molecular_function	rRNA binding
d	0042274	biological_process	ribosomal small subunit biogenesis
D	0003735	molecular_function	structural constituent of ribosome
D	0005840	cellular_component	ribosome
D	0006417	biological_process	regulation of translation
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005763	cellular_component	mitochondrial small ribosomal subunit
e	0006412	biological_process	translation
e	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005762	cellular_component	mitochondrial large ribosomal subunit
E	0006412	biological_process	translation
E	0009507	cellular_component	chloroplast
E	0019843	molecular_function	rRNA binding
f	0003735	molecular_function	structural constituent of ribosome
f	0070181	molecular_function	small ribosomal subunit rRNA binding
F	0003735	molecular_function	structural constituent of ribosome
g	0003729	molecular_function	mRNA binding
g	0003735	molecular_function	structural constituent of ribosome
g	0005840	cellular_component	ribosome
g	0006412	biological_process	translation
g	0009507	cellular_component	chloroplast
g	0019843	molecular_function	rRNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0006412	biological_process	translation
G	0015934	cellular_component	large ribosomal subunit
h	0003735	molecular_function	structural constituent of ribosome
h	0005737	cellular_component	cytoplasm
h	0006412	biological_process	translation
h	0009507	cellular_component	chloroplast
h	0019843	molecular_function	rRNA binding
H	0003735	molecular_function	structural constituent of ribosome
H	0006412	biological_process	translation
H	0015934	cellular_component	large ribosomal subunit
i	0003723	molecular_function	RNA binding
i	0003735	molecular_function	structural constituent of ribosome
i	0009507	cellular_component	chloroplast
i	0015935	cellular_component	small ribosomal subunit
I	0003735	molecular_function	structural constituent of ribosome
I	0006412	biological_process	translation
I	0015934	cellular_component	large ribosomal subunit
I	0070180	molecular_function	large ribosomal subunit rRNA binding
j	0003735	molecular_function	structural constituent of ribosome
j	0005739	cellular_component	mitochondrion
j	0015935	cellular_component	small ribosomal subunit
J	0003729	molecular_function	mRNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005762	cellular_component	mitochondrial large ribosomal subunit
J	0005840	cellular_component	ribosome
J	0017148	biological_process	negative regulation of translation
k	0003735	molecular_function	structural constituent of ribosome
k	0006412	biological_process	translation
k	0009507	cellular_component	chloroplast
k	0019843	molecular_function	rRNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0006412	biological_process	translation
K	0009507	cellular_component	chloroplast
K	0019843	molecular_function	rRNA binding
K	0022625	cellular_component	cytosolic large ribosomal subunit
K	0070180	molecular_function	large ribosomal subunit rRNA binding
l	0003735	molecular_function	structural constituent of ribosome
l	0005840	cellular_component	ribosome
l	0006412	biological_process	translation
l	0009507	cellular_component	chloroplast
l	0019843	molecular_function	rRNA binding
m	0003735	molecular_function	structural constituent of ribosome
m	0005739	cellular_component	mitochondrion
m	0015935	cellular_component	small ribosomal subunit
M	0003735	molecular_function	structural constituent of ribosome
M	0005762	cellular_component	mitochondrial large ribosomal subunit
M	0006412	biological_process	translation
M	0009507	cellular_component	chloroplast
M	0019843	molecular_function	rRNA binding
M	0032543	biological_process	mitochondrial translation
n	0003735	molecular_function	structural constituent of ribosome
n	0006412	biological_process	translation
n	0009507	cellular_component	chloroplast
n	0015935	cellular_component	small ribosomal subunit
n	0019843	molecular_function	rRNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0006412	biological_process	translation
N	0015934	cellular_component	large ribosomal subunit
o	0003735	molecular_function	structural constituent of ribosome
o	0005737	cellular_component	cytoplasm
o	0005763	cellular_component	mitochondrial small ribosomal subunit
o	0006412	biological_process	translation
O	0005737	cellular_component	cytoplasm
O	0008097	molecular_function	5S rRNA binding
p	0003735	molecular_function	structural constituent of ribosome
p	0005737	cellular_component	cytoplasm
p	0015935	cellular_component	small ribosomal subunit
P	0003729	molecular_function	mRNA binding
P	0003735	molecular_function	structural constituent of ribosome
P	0015934	cellular_component	large ribosomal subunit
q	0003735	molecular_function	structural constituent of ribosome
q	0005739	cellular_component	mitochondrion
Q	0000027	biological_process	ribosomal large subunit assembly
Q	0003735	molecular_function	structural constituent of ribosome
Q	0009507	cellular_component	chloroplast
Q	0015934	cellular_component	large ribosomal subunit
Q	0019843	molecular_function	rRNA binding
r	0003735	molecular_function	structural constituent of ribosome
r	0005763	cellular_component	mitochondrial small ribosomal subunit
r	0006412	biological_process	translation
r	0009507	cellular_component	chloroplast
r	0019843	molecular_function	rRNA binding
r	0070181	molecular_function	small ribosomal subunit rRNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005737	cellular_component	cytoplasm
R	0005762	cellular_component	mitochondrial large ribosomal subunit
R	0009536	cellular_component	plastid
R	0032543	biological_process	mitochondrial translation
s	0003735	molecular_function	structural constituent of ribosome
s	0005737	cellular_component	cytoplasm
s	0005763	cellular_component	mitochondrial small ribosomal subunit
s	0006412	biological_process	translation
s	0009507	cellular_component	chloroplast
s	0019843	molecular_function	rRNA binding
S	0009507	cellular_component	chloroplast
t	0015935	cellular_component	small ribosomal subunit
t	0070181	molecular_function	small ribosomal subunit rRNA binding
T	0003735	molecular_function	structural constituent of ribosome
T	0006412	biological_process	translation
T	0009507	cellular_component	chloroplast
T	0019843	molecular_function	rRNA binding
T	0022625	cellular_component	cytosolic large ribosomal subunit
U	0003735	molecular_function	structural constituent of ribosome
U	0005739	cellular_component	mitochondrion
U	0006412	biological_process	translation
v	0009507	cellular_component	chloroplast
v	0032544	biological_process	plastid translation
V	0003735	molecular_function	structural constituent of ribosome
V	0006412	biological_process	translation
V	0015934	cellular_component	large ribosomal subunit
w	0003729	molecular_function	mRNA binding
w	0005737	cellular_component	cytoplasm
W	0003735	molecular_function	structural constituent of ribosome
Y	0003735	molecular_function	structural constituent of ribosome
Y	0006412	biological_process	translation

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrtrkgirre.NGmairFddNaaVI

Chain	Residue	Details
K	ALA60-ILE86

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GivIVSTPeGLMtdreAR

Chain	Residue	Details
h	GLY111-ARG128

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
l	LYS43-ARG50

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRehipvfVsdqmVGhrLGEFspT

Chain	Residue	Details
s	ASN53-THR77

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LamIAGQkgVvTrSKkA

Chain	Residue	Details
E	LEU58-ALA74

site_id	PS00359
Number of Residues	16
Details	RIBOSOMAL_L11 Ribosomal protein L11 signature. RmIeGTakNMGiKIvD

Chain	Residue	Details
I	ARG161-ASP176

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGlmGQteAirlGiSRAL

Chain	Residue	Details
i	GLY100-LEU118

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AeatGAvfkGPVmLPT

Chain	Residue	Details
j	ALA95-THR110

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. IsaHLaqnKkDfaArrgLeaIlsqrksLlqY

Chain	Residue	Details
o	ILE74-TYR104

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. KraRpRAqGRanlimkptFHMTIrV

Chain	Residue	Details
S	LYS146-VAL170

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGSVmNPvD

Chain	Residue	Details
B	PRO220-ASP231

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. LkegepvDiaGiTvGKGfqGtikR

Chain	Residue	Details
C	LEU148-ARG171

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGtGsLsks..LnVhataFSesAkaaIeaaG

Chain	Residue	Details
L	LYS149-GLY179

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI

Chain	Residue	Details
F	PRO179-ILE187

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CmitgrpkgyfrdFGLSRhVLR

Chain	Residue	Details
n	ARG62-ARG84

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARsewvraGrVplQt..LranIDyayrtanTiyGiiG

Chain	Residue	Details
c	ALA666-GLY700

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GKlmgFrCtaIIGNgn.GlVGvGcqagr.EVat.AV

Chain	Residue	Details
e	GLY530-VAL562

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRgGKLWIRIFP

Chain	Residue	Details
M	ARG59-PRO70

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEmRLdniVFRlnmApTipaARqLI

Chain	Residue	Details
d	LEU108-ILE132

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGrRHimGlpVRGQ

Chain	Residue	Details
m	ARG127-GLN140

site_id	PS00651
Number of Residues	28
Details	RIBOSOMAL_L9 Ribosomal protein L9 signature. GkeGeiktVpvGYwrNFLlpngmAkiaS

Chain	Residue	Details
G	GLY49-SER76

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGapdyW

Chain	Residue	Details
M	ARG82-TRP93

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgal.GRdiklhLkVYkG

Chain	Residue	Details
J	VAL167-GLY189

site_id	PS00828
Number of Residues	26
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CdnCrvIkRkgkVmViCsna.KHkQrQ

Chain	Residue	Details
9	CYS11-GLN36

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTRkSAaKRFkvtgsgkvtarhagk.QH

Chain	Residue	Details
8	LYS49-HIS75

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRrMWITRVNsavR

Chain	Residue	Details
Q	LYS54-ARG70

site_id	PS01015
Number of Residues	16
Details	RIBOSOMAL_L19 Ribosomal protein L19 signature. FvRrGRVR.RAKLFYLR

Chain	Residue	Details
P	PHE113-ARG128

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVqIIaGkdKGkv.GtI

Chain	Residue	Details
U	GLY73-ILE90

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VivyKmrpKKhyrkkqGHRQdlS

Chain	Residue	Details
R	VAL148-SER170

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI2
Number of Residues	60
Details	Domain: {"description":"S4 RNA-binding 1"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	66
Details	Domain: {"description":"S4 RNA-binding 2"}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	131
Details	Region: {"description":"S3-like 2nd part"}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00251","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)