PDB: 126 resultsInfo pagesStatus searchChemie searchBIRD

---

8ZNG	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Nakasako, M. Deposit date: 2024-05-26 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action To Be Published
8ZNE	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction Descriptor: GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Nakasako, M. Deposit date: 2024-05-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action To Be Published
8ZNB	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Nakasako, M. Deposit date: 2024-05-26 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action To Be Published
8ZNC	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Nakasako, M. Deposit date: 2024-05-26 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action To Be Published
8ZND	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Nakasako, M. Deposit date: 2024-05-26 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action To Be Published
8ZMU	GLUTAMATE DEHYDROGENASE (W89F-MUTANT) FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGANDED STATE Descriptor: ACETIC ACID, GLYCEROL, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Matsui, Y, Masayoshi, M. Deposit date: 2024-05-23 Release date: 2024-06-05 Method: X-RAY DIFFRACTION (2.028 Å) Cite: Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action To Be Published
8S3D	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2-amino-2-hydroxyglutarate (reaction intermediate) and NAD Descriptor: (2S)-2-azanyl-2-oxidanyl-pentanedioic acid, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8S39	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with isophthalic acid and NAD Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (2 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8S3C	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 (unliganded) Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8S3B	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 3-(1H-Tetrazol-5-yl)benzoic acid and NAD Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-(1~{H}-1,2,3,4-tetrazol-5-yl)benzoic acid, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8S3A	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2,6-pyridinedicarboxylic acid and NAD Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8S38	Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with citrate and NAD Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CITRIC ACID, ... Authors: Grzechowiak, M, Ruszkowski, M. Deposit date: 2024-02-19 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies. Int.J.Biol.Macromol., 278, 2024
8XCX	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD4	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCQ	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCU	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG and GLU in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCR	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD2	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCV	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCW	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD0	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD1	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD5	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCO	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the initial stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCS	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the initial stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024

 

123456>