2V89
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE AT 1.1A RESOLUTION
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-03
Release date:2007-12-11
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rag2 Phd Finger Couples Histone H3 Lysine 4 Trimethylation with V(D)J Recombination.
Nature, 450, 2007
3MEA
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CRYSTAL STRUCTURE OF THE SGF29 IN COMPLEX WITH H3K4ME3
Descriptor:SAGA-associated factor 29 homolog, Histone H3
Authors:Bian, C., Xu, C., Tempel, W., MacKenzie, F., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
5WXH
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CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO H3K4ME3
Descriptor:Transcription initiation factor TFIID subunit 3, Histone H3K4me3, ZINC ION
Authors:Zhao, S., Huang, J., Li, H.
Deposit date:2017-01-07
Release date:2017-08-16
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.297 Å)
Cite:Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4L7X
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CRYSTAL STRUCTURE OF THE DIDO PHD FINGER IN COMPLEX WITH H3K4ME3
Descriptor:Death-inducer obliterator 1, Histone H3 peptide, ZINC ION
Authors:Tong, Q., Gatchalian, J., Kutateladze, T.G.
Deposit date:2013-06-14
Release date:2013-07-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Dido3 PHD Modulates Cell Differentiation and Division.
Cell Rep, 4, 2013
3ME9
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CRYSTAL STRUCTURE OF SGF29 IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:SAGA-associated factor 29 homolog, Histone H3, UNKNOWN ATOM OR ION, ...
Authors:Bian, C., Tempel, W., Xu, C., Guo, Y., Dong, A., Crombet, L., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
5WLF
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CRYSTAL STRUCTURE OF THE APO PPS PHD FINGER
Descriptor:Protein partner of snf, isoform A, GLYCEROL, ...
Authors:Klein, B.J., Kutateladze, T.G.
Deposit date:2017-07-26
Release date:2017-10-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.
Structure, 25, 2017
2RI7
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CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN Y17E MUTANT FROM HUMAN BPTF IN THE H3(1-9)K4ME2 BOUND STATE
Descriptor:Nucleosome-remodeling factor subunit BPTF, histone H3.1, ZINC ION, ...
Authors:Li, H., Patel, D.J.
Deposit date:2007-10-10
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger.
Mol.Cell, 28, 2007
3MP6
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COMPLEX STRUCTURE OF SGF29 AND DIMETHYLATED H3K4
Descriptor:Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29, H3K4me2 peptide, MALTOSE
Authors:Li, J., Wu, M., Ruan, J., Zang, J.
Deposit date:2010-04-25
Release date:2011-05-04
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Embo J., 30, 2011
4L58
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CRYSTAL STRUCTURE OF THE MLL5 PHD FINGER IN COMPLEX WITH H3K4ME3
Descriptor:Histone-lysine N-methyltransferase MLL5, Histone H3 peptide, ZINC ION
Authors:Tong, Q., Ali, M., Kutateladze, T.G.
Deposit date:2013-06-10
Release date:2013-06-26
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Molecular basis for chromatin binding and regulation of MLL5.
Proc.Natl.Acad.Sci.USA, 110, 2013
3QZT
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CRYSTAL STRUCTURE OF BPTF BROMO IN COMPLEX WITH HISTONE H4K16AC - FORM II
Descriptor:Nucleosome-remodeling factor subunit BPTF, Histone H4, GLYCEROL
Authors:Li, H., Ruthenburg, A.J., Patel, D.J.
Deposit date:2011-03-07
Release date:2011-06-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions.
Cell(Cambridge,Mass.), 145, 2011
5SVX
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MORC3 CW IN COMPLEX WITH HISTONE H3K4ME3
Descriptor:MORC family CW-type zinc finger protein 3, H3K4me3, ZINC ION
Authors:Tong, Q., Andrews, F.H., Kutateladze, T.G.
Deposit date:2016-08-08
Release date:2016-10-05
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Multivalent Chromatin Engagement and Inter-domain Crosstalk Regulate MORC3 ATPase.
Cell Rep, 16, 2016
3K26
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COMPLEX STRUCTURE OF EED AND TRIMETHYLATED H3K4
Descriptor:Polycomb protein EED, HISTONE PEPTIDE
Authors:Bian, C.B., Xu, C., Qiu, W., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2009-09-29
Release date:2009-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2).
Proc.Natl.Acad.Sci.USA, 107, 2010
3UV2
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CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF
Descriptor:bromodomain of human nucleosome-remodeling factor subunit BPTF, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
Authors:Filippakopoulos, P., Picaud, S., Keates, T., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
Deposit date:2011-11-29
Release date:2012-01-18
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
5C0M
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CRYSTAL STRUCTURE OF SGF29 TANDEM TUDOR DOMAIN IN COMPLEX WITH A CARBA CONTAINING PEPTIDE
Descriptor:SAGA-associated factor 29 homolog, Carba-containing peptide, SULFATE ION, ...
Authors:Dong, A., Xu, C., Tempel, W., Cerovina, T., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2015-06-12
Release date:2015-07-01
Last modified:2016-03-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Chemical basis for the recognition of trimethyllysine by epigenetic reader proteins.
Nat Commun, 6, 2015
3O7A
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CRYSTAL STRUCTURE OF PHF13 IN COMPLEX WITH H3K4ME3
Descriptor:PHD finger protein 13 variant, H3K4ME3 HISTONE 11MER-PEPTIDE, GLYCEROL, ...
Authors:Bian, C.B., Lam, R., Xu, C., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-07-30
Release date:2010-10-06
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3.
Elife, 5, 2016
4PL6
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STRUCTURE OF THE CHROMODOMAIN OF MRG2 IN COMPLEX WITH H3K4ME3
Descriptor:At1g02740, H3K4me3
Authors:Liu, Y.C., Huang, Y.
Deposit date:2014-05-16
Release date:2015-07-22
Last modified:2016-05-04
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.
Plos Genet., 10, 2014
4MZG
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CRYSTAL STRUCTURE OF HUMAN SPINDLIN1 BOUND TO HISTONE H3K4ME3 PEPTIDE
Descriptor:Peptide from Histone H3.2, Spindlin-1, (4R)-2-METHYLPENTANE-2,4-DIOL, ...
Authors:Su, X., Ding, X., Li, H.
Deposit date:2013-09-30
Release date:2014-03-26
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1
Genes Dev., 28, 2014
5XMY
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CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO H3K4ME3Q5SER
Descriptor:Transcription initiation factor TFIID subunit 3, Histone peptide H3(1-15)K4me3Q5ser, ZINC ION
Authors:Zhao, S., Zhang, B., Li, H.
Deposit date:2017-05-16
Release date:2018-11-28
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Crystal structure of TAF3 PHD finger bound to H3K4me3Q5ser
to be published
5TDW
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SET3 PHD FINGER IN COMPLEX WITH HISTONE H3K4ME3
Descriptor:SET domain-containing protein 3, histone H3K4me3, ZINC ION, ...
Authors:Andrews, F.H., Ali, M., Kutateladze, T.G.
Deposit date:2016-09-19
Release date:2016-10-19
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insight into Recognition of Methylated Histone H3K4 by Set3.
J. Mol. Biol., 429, 2017
3C6W
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CRYSTAL STRUCTURE OF THE ING5 PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:Inhibitor of growth protein 5, H3K4me3 histone peptide, ZINC ION
Authors:Champagne, K.S., Pena, P.V., Johnson, K., Kutateladze, T.G.
Deposit date:2008-02-05
Release date:2008-06-03
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide.
Proteins, 72, 2008
2VNF
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MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4
Descriptor:INHIBITOR OF GROWTH PROTEIN 4, HISTONE H3, SODIUM ION, ...
Authors:Palacios, A., Munoz, I.G., Pantoja-Uceda, D., Marcaida, M.J., Torres, D., Martin-Garcia, J.M., Luque, I., Montoya, G., Blanco, F.J.
Deposit date:2008-02-04
Release date:2008-04-01
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Molecular Basis of Histone H3K4Me3 Recognition by Ing4
J.Biol.Chem., 283, 2008
3KQI
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CRYSTAL STRUCTURE OF PHF2 PHD DOMAIN COMPLEXED WITH H3K4ME3 PEPTIDE
Descriptor:PHD finger protein 2, H3K4Me3 peptide, ZINC ION, ...
Authors:Wen, H., Li, J.Z., Song, T., Lu, M., Lee, M.
Deposit date:2009-11-17
Release date:2010-02-02
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation.
J.Biol.Chem., 285, 2010
2PNX
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THE PHD FINGER OF ING4 IN COMPLEX WITH AN H3K4ME3 HISTONE PEPTIDE
Descriptor:Inhibitor of growth protein 4, H3K4Me3 peptide, ZINC ION
Authors:Champagne, K.S., Johnson, K., Kutateladze, T.G.
Deposit date:2007-04-25
Release date:2008-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation
Mol.Cell, 33, 2009
2QQR
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JMJD2A HYBRID TUDOR DOMAINS
Descriptor:JmjC domain-containing histone demethylation protein 3A, SULFATE ION
Authors:Lee, J., Botuyan, M.V., Mer, G.
Deposit date:2007-07-26
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor.
Nat.Struct.Mol.Biol., 15, 2008
2V87
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME3 PEPTIDE
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3.2, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
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