PDB: 125 resultsInfo pagesStatus searchChemie searchBIRD

---

5X06	DNA replication regulation protein Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ... Authors: Kim, J, Cho, Y. Deposit date: 2017-01-20 Release date: 2018-01-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.237 Å) Cite: Replication regulation protein To Be Published
7RZM	Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a Descriptor: DNA polymerase III subunit beta Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-08-27 Release date: 2021-10-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a To Be Published
3RB9	Crystal structure of the M. tuberculosis beta clamp Descriptor: DNA polymerase III subunit beta Authors: Kukshal, V, Ramachandran, R. Deposit date: 2011-03-29 Release date: 2012-04-04 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3 Å) Cite: M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
7EVP	Cryo-EM structure of the Gp168-beta-clamp complex Descriptor: Beta sliding clamp, Sliding clamp inhibitor Authors: Liu, B, Li, S, Liu, Y, Chen, H, Hu, Z, Wang, Z, Gou, L, Zhang, L, Ma, B, Wang, H, Matthews, S, Wang, Y, Zhang, K. Deposit date: 2021-05-21 Release date: 2022-02-16 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel. Nucleic Acids Res., 49, 2021
2XUR	The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication Descriptor: DNA POLYMERASE III SUBUNIT BETA Authors: Johnsen, L, Morigen, Dalhus, B, Bjoras, M, Flaatten, I, Waldminghaus, T, Skarstad, K. Deposit date: 2010-10-20 Release date: 2011-02-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The G157C Mutation in the Escherichia Coli Sliding Clamp Specifically Affects Initiation of Replication. Mol.Microbiol., 79, 2011
3T0P	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2011-07-20 Release date: 2011-08-10 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution To be published
1VPK	Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution Descriptor: DNA polymerase III, beta subunit Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2004-11-09 Release date: 2004-11-23 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution To be published
7YBD	Crystal structure of sliding DNA clamp of Clostridioides difficile Descriptor: Beta sliding clamp, TRIETHYLENE GLYCOL Authors: Hishiki, A, Okazaki, S, Hara, K, Hashimoto, H. Deposit date: 2022-06-29 Release date: 2022-10-19 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile. J.Biochem., 173, 2022
5M1S	Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode Descriptor: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2016-10-10 Release date: 2017-01-18 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Self-correcting mismatches during high-fidelity DNA replication. Nat. Struct. Mol. Biol., 24, 2017
3BEP	Structure of a sliding clamp on DNA Descriptor: 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3'), DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3'), ... Authors: Georgescu, R.E, Kim, S.S, Yurieva, O, Kuriyan, J, Kong, X.-P, O'Donnell, M. Deposit date: 2007-11-19 Release date: 2008-01-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Structure of a sliding clamp on DNA Cell(Cambridge,Mass.), 132, 2008
1UNN	Complex of beta-clamp processivity factor and little finger domain of PolIV Descriptor: DNA POLYMERASE III BETA SUBUNIT, DNA POLYMERASE IV, SULFATE ION Authors: Bunting, K.A, Roe, S.M, Pearl, L.H. Deposit date: 2003-09-11 Release date: 2003-11-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis for Recruitment of Translesion DNA Polymerase Pol Iv/Dinb to the Beta-Clamp Embo J., 22, 2003
2POL	THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP Descriptor: DNA POLYMERASE III (BETA SUBUNIT) Authors: Kong, X.-P, Kuriyan, J. Deposit date: 1992-11-13 Release date: 1994-01-31 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell(Cambridge,Mass.), 69, 1992
1OK7	A Conserved protein binding-site on Bacterial Sliding Clamps Descriptor: DNA POLYMERASE III, DNA POLYMERASE IV Authors: Burnouf, D.Y, Olieric, V, Wagner, J, Fujii, S, Reinbolt, J, Fuchs, R.P.P, Dumas, P. Deposit date: 2003-07-18 Release date: 2004-07-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases J.Mol.Biol., 335, 2004
8PAY	Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 2. Descriptor: ACE-GLN-ALC-GLC-LEU-PHE, Beta sliding clamp, GLYCEROL, ... Authors: Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, wagner, J, Guichard, G. Deposit date: 2023-06-08 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (1.21 Å) Cite: Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp. Jacs Au, 4, 2024
1JQJ	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex Descriptor: DNA polymerase III, beta chain, delta subunit Authors: Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. Deposit date: 2001-08-07 Release date: 2001-11-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
5W7Z	Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, DNA polymerase III subunit beta Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-06-21 Release date: 2017-07-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii to be published
1JQL	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140) Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT Authors: Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. Deposit date: 2001-08-07 Release date: 2001-09-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
8PAT	Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 3. Descriptor: ACE-GLN-ALC-GLX-LEU-PHE, Beta sliding clamp Authors: Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, Guichard, G. Deposit date: 2023-06-08 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp. Jacs Au, 4, 2024
2AVT	Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes Descriptor: DNA polymerase III beta subunit Authors: Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J. Deposit date: 2005-08-30 Release date: 2006-01-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. Bmc Struct.Biol., 6, 2006
2AWA	Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution Descriptor: DNA polymerase III, beta chain, GLYCEROL Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2005-08-31 Release date: 2005-09-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution To be published
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... Authors: Landeck, J.T, Pajak, J, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) Descriptor: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2015-10-20 Release date: 2015-11-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (8.34 Å) Cite: cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FRQ	Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide Descriptor: DNA LIGASE, DNA POLYMERASE III SUBUNIT BETA Authors: Pandey, P, Gourinath, S. Deposit date: 2015-12-21 Release date: 2016-08-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori Sci.Rep., 6, 2016
5WCE	Caulobacter crescentus pol III beta Descriptor: DNA polymerase III subunit beta Authors: Oakley, A.J. Deposit date: 2017-06-30 Release date: 2017-07-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of Pol III beta from Caulobacter crescentus To Be Published

 

12345>