7WL0
Crystal structure of human ALKBH5 in complex with N-oxalylglycine (NOG) and m6A-containing ssRNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006397 | biological_process | mRNA processing |
A | 0035515 | molecular_function | oxidative RNA demethylase activity |
C | 0006397 | biological_process | mRNA processing |
C | 0035515 | molecular_function | oxidative RNA demethylase activity |
E | 0006397 | biological_process | mRNA processing |
E | 0035515 | molecular_function | oxidative RNA demethylase activity |
G | 0006397 | biological_process | mRNA processing |
G | 0035515 | molecular_function | oxidative RNA demethylase activity |
I | 0006397 | biological_process | mRNA processing |
I | 0035515 | molecular_function | oxidative RNA demethylase activity |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: ACT_SITE => ECO:0000269|PubMed:35333330 |
Chain | Residue | Details |
A | TYR139 | |
C | TYR139 | |
E | TYR139 | |
G | TYR139 | |
I | TYR139 |
site_id | SWS_FT_FI2 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24778178, ECO:0000269|PubMed:35333330, ECO:0007744|PDB:4NRO, ECO:0007744|PDB:4OCT, ECO:0007744|PDB:7WKV |
Chain | Residue | Details |
A | ASN193 | |
G | ASN193 | |
G | TYR195 | |
G | ARG277 | |
I | ASN193 | |
I | TYR195 | |
I | ARG277 | |
A | TYR195 | |
A | ARG277 | |
C | ASN193 | |
C | TYR195 | |
C | ARG277 | |
E | ASN193 | |
E | TYR195 | |
E | ARG277 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000305|PubMed:24616105, ECO:0000305|PubMed:24778178, ECO:0000305|PubMed:35333330, ECO:0007744|PDB:7V4G, ECO:0007744|PDB:7WKV, ECO:0007744|PDB:7WL0 |
Chain | Residue | Details |
A | HIS204 | |
G | HIS204 | |
G | ASP206 | |
G | HIS266 | |
I | HIS204 | |
I | ASP206 | |
I | HIS266 | |
A | ASP206 | |
A | HIS266 | |
C | HIS204 | |
C | ASP206 | |
C | HIS266 | |
E | HIS204 | |
E | ASP206 | |
E | HIS266 |
site_id | SWS_FT_FI4 |
Number of Residues | 5 |
Details | MOD_RES: Phosphoserine; by MAPK8 and MAPK9 => ECO:0000269|PubMed:34048572 |
Chain | Residue | Details |
A | SER87 | |
C | SER87 | |
E | SER87 | |
G | SER87 | |
I | SER87 |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS132 | |
C | LYS132 | |
E | LYS132 | |
G | LYS132 | |
I | LYS132 |
site_id | SWS_FT_FI6 |
Number of Residues | 5 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:37369679 |
Chain | Residue | Details |
A | LYS235 | |
C | LYS235 | |
E | LYS235 | |
G | LYS235 | |
I | LYS235 |
site_id | SWS_FT_FI7 |
Number of Residues | 10 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1) => ECO:0000269|PubMed:34048572 |
Chain | Residue | Details |
A | LYS86 | |
C | LYS86 | |
E | LYS86 | |
G | LYS86 | |
I | LYS86 |