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Cryo-EM structure of D-site Rac1-bound WAVE Regulatory Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000340molecular_functionRNA 7-methylguanosine cap binding
A0000902biological_processcell morphogenesis
A0001726cellular_componentruffle
A0003779molecular_functionactin binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005925cellular_componentfocal adhesion
A0006417biological_processregulation of translation
A0007399biological_processnervous system development
A0007411biological_processaxon guidance
A0008360biological_processregulation of cell shape
A0010592biological_processpositive regulation of lamellipodium assembly
A0016601biological_processRac protein signal transduction
A0017148biological_processnegative regulation of translation
A0030027cellular_componentlamellipodium
A0030032biological_processlamellipodium assembly
A0030154biological_processcell differentiation
A0030371molecular_functiontranslation repressor activity
A0030833biological_processregulation of actin filament polymerization
A0031175biological_processneuron projection development
A0031209cellular_componentSCAR complex
A0031267molecular_functionsmall GTPase binding
A0031529biological_processruffle organization
A0031641biological_processregulation of myelination
A0032433cellular_componentfilopodium tip
A0032869biological_processcellular response to insulin stimulus
A0034774cellular_componentsecretory granule lumen
A0035580cellular_componentspecific granule lumen
A0043005cellular_componentneuron projection
A0043025cellular_componentneuronal cell body
A0043195cellular_componentterminal bouton
A0043197cellular_componentdendritic spine
A0044294cellular_componentdendritic growth cone
A0044295cellular_componentaxonal growth cone
A0045202cellular_componentsynapse
A0045773biological_processpositive regulation of axon extension
A0048471cellular_componentperinuclear region of cytoplasm
A0048675biological_processaxon extension
A0050772biological_processpositive regulation of axonogenesis
A0050890biological_processcognition
A0051015molecular_functionactin filament binding
A0051388biological_processpositive regulation of neurotrophin TRK receptor signaling pathway
A0051602biological_processresponse to electrical stimulus
A0060076cellular_componentexcitatory synapse
A0070062cellular_componentextracellular exosome
A0090724cellular_componentcentral region of growth cone
A0090725cellular_componentperipheral region of growth cone
A0097484biological_processdendrite extension
A0098794cellular_componentpostsynapse
A0099563biological_processmodification of synaptic structure
A0099578biological_processregulation of translation at postsynapse, modulating synaptic transmission
A1900006biological_processpositive regulation of dendrite development
A1900029biological_processpositive regulation of ruffle assembly
A1903422biological_processnegative regulation of synaptic vesicle recycling
A1904724cellular_componenttertiary granule lumen
A1905274biological_processregulation of modification of postsynaptic actin cytoskeleton
A2000601biological_processpositive regulation of Arp2/3 complex-mediated actin nucleation
B0000902biological_processcell morphogenesis
B0001726cellular_componentruffle
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0006915biological_processapoptotic process
B0007417biological_processcentral nervous system development
B0010592biological_processpositive regulation of lamellipodium assembly
B0016477biological_processcell migration
B0016601biological_processRac protein signal transduction
B0030027cellular_componentlamellipodium
B0030031biological_processcell projection assembly
B0030838biological_processpositive regulation of actin filament polymerization
B0030866biological_processcortical actin cytoskeleton organization
B0031209cellular_componentSCAR complex
B0031258cellular_componentlamellipodium membrane
B0031267molecular_functionsmall GTPase binding
B0031941cellular_componentfilamentous actin
B0042995cellular_componentcell projection
B0048812biological_processneuron projection morphogenesis
B0070062cellular_componentextracellular exosome
B2000601biological_processpositive regulation of Arp2/3 complex-mediated actin nucleation
C0003779molecular_functionactin binding
C0005856cellular_componentcytoskeleton
C0030036biological_processactin cytoskeleton organization
D0001701biological_processin utero embryonic development
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0007015biological_processactin filament organization
D0008064biological_processregulation of actin polymerization or depolymerization
D0010592biological_processpositive regulation of lamellipodium assembly
D0016601biological_processRac protein signal transduction
D0030027cellular_componentlamellipodium
D0030036biological_processactin cytoskeleton organization
D0031209cellular_componentSCAR complex
D0031267molecular_functionsmall GTPase binding
D0031334biological_processpositive regulation of protein-containing complex assembly
D0042802molecular_functionidentical protein binding
D0044877molecular_functionprotein-containing complex binding
D0048144biological_processfibroblast proliferation
D0048146biological_processpositive regulation of fibroblast proliferation
D0048870biological_processcell motility
D0070062cellular_componentextracellular exosome
D2000601biological_processpositive regulation of Arp2/3 complex-mediated actin nucleation
F0001764biological_processneuron migration
F0001934biological_processpositive regulation of protein phosphorylation
F0003376biological_processsphingosine-1-phosphate receptor signaling pathway
F0003924molecular_functionGTPase activity
F0003925molecular_functionG protein activity
F0005515molecular_functionprotein binding
F0005525molecular_functionGTP binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005789cellular_componentendoplasmic reticulum membrane
F0005802cellular_componenttrans-Golgi network
F0005829cellular_componentcytosol
F0005856cellular_componentcytoskeleton
F0005884cellular_componentactin filament
F0005886cellular_componentplasma membrane
F0005925cellular_componentfocal adhesion
F0005938cellular_componentcell cortex
F0006954biological_processinflammatory response
F0007015biological_processactin filament organization
F0007155biological_processcell adhesion
F0007160biological_processcell-matrix adhesion
F0007163biological_processestablishment or maintenance of cell polarity
F0007264biological_processsmall GTPase-mediated signal transduction
F0008045biological_processmotor neuron axon guidance
F0008360biological_processregulation of cell shape
F0008361biological_processregulation of cell size
F0009611biological_processresponse to wounding
F0009653biological_processanatomical structure morphogenesis
F0010310biological_processregulation of hydrogen peroxide metabolic process
F0010591biological_processregulation of lamellipodium assembly
F0010592biological_processpositive regulation of lamellipodium assembly
F0010595biological_processpositive regulation of endothelial cell migration
F0010764biological_processnegative regulation of fibroblast migration
F0010811biological_processpositive regulation of cell-substrate adhesion
F0016020cellular_componentmembrane
F0016477biological_processcell migration
F0016601biological_processRac protein signal transduction
F0016787molecular_functionhydrolase activity
F0019899molecular_functionenzyme binding
F0019901molecular_functionprotein kinase binding
F0030027cellular_componentlamellipodium
F0030031biological_processcell projection assembly
F0030032biological_processlamellipodium assembly
F0030036biological_processactin cytoskeleton organization
F0030041biological_processactin filament polymerization
F0030334biological_processregulation of cell migration
F0030425cellular_componentdendrite
F0030667cellular_componentsecretory granule membrane
F0030865biological_processcortical cytoskeleton organization
F0031116biological_processpositive regulation of microtubule polymerization
F0031410cellular_componentcytoplasmic vesicle
F0031529biological_processruffle organization
F0031996molecular_functionthioesterase binding
F0032587cellular_componentruffle membrane
F0032707biological_processnegative regulation of interleukin-23 production
F0032956biological_processregulation of actin cytoskeleton organization
F0034446biological_processsubstrate adhesion-dependent cell spreading
F0035025biological_processpositive regulation of Rho protein signal transduction
F0035556biological_processintracellular signal transduction
F0036464cellular_componentcytoplasmic ribonucleoprotein granule
F0042470cellular_componentmelanosome
F0042995cellular_componentcell projection
F0043020cellular_componentNADPH oxidase complex
F0043197cellular_componentdendritic spine
F0043652biological_processengulfment of apoptotic cell
F0044877molecular_functionprotein-containing complex binding
F0045202cellular_componentsynapse
F0045428biological_processregulation of nitric oxide biosynthetic process
F0045730biological_processrespiratory burst
F0048012biological_processhepatocyte growth factor receptor signaling pathway
F0048261biological_processnegative regulation of receptor-mediated endocytosis
F0048870biological_processcell motility
F0051022molecular_functionRho GDP-dissociation inhibitor binding
F0051492biological_processregulation of stress fiber assembly
F0051496biological_processpositive regulation of stress fiber assembly
F0051668biological_processlocalization within membrane
F0051894biological_processpositive regulation of focal adhesion assembly
F0055038cellular_componentrecycling endosome membrane
F0060071biological_processWnt signaling pathway, planar cell polarity pathway
F0060263biological_processregulation of respiratory burst
F0060326biological_processcell chemotaxis
F0070062cellular_componentextracellular exosome
F0071526biological_processsemaphorin-plexin signaling pathway
F0090023biological_processpositive regulation of neutrophil chemotaxis
F0097178biological_processruffle assembly
F0098794cellular_componentpostsynapse
F0098978cellular_componentglutamatergic synapse
F0101003cellular_componentficolin-1-rich granule membrane
F1900026biological_processpositive regulation of substrate adhesion-dependent cell spreading
F1902622biological_processregulation of neutrophil migration
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P62484
ChainResidueDetails
ESER40
FGLY30
FGLY60

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR, ECO:0007744|PDB:5HZH
ChainResidueDetails
FLYS116
FALA159

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: (Microbial infection) O-AMP-tyrosine; by Haemophilus IbpA; alternate => ECO:0000269|PubMed:19362538
ChainResidueDetails
FTYR32

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: (Microbial infection) O-AMP-threonine; by Vibrio VopS => ECO:0000269|PubMed:19039103
ChainResidueDetails
FTHR35

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:10617634
ChainResidueDetails
FSER71

site_idSWS_FT_FI6
Number of Residues2
DetailsLIPID: (Microbial infection) N6-palmitoyl lysine => ECO:0000269|PubMed:29074776
ChainResidueDetails
FLYS183
FLYS184

site_idSWS_FT_FI7
Number of Residues1
DetailsCARBOHYD: (Microbial infection) O-linked (GlcNAc) tyrosine; by Photorhabdus PAU_02230; alternate => ECO:0000269|PubMed:24141704
ChainResidueDetails
FTYR32

site_idSWS_FT_FI8
Number of Residues1
DetailsCARBOHYD: (Microbial infection) O-linked (Glc) threonine; by C.difficile toxins TcdA and TcdB, and by P.sordellii toxin TcsL; alternate => ECO:0000269|PubMed:19744486, ECO:0000269|PubMed:24905543, ECO:0000269|PubMed:7775453, ECO:0000269|PubMed:7777059
ChainResidueDetails
FTHR35

site_idSWS_FT_FI9
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18093184
ChainResidueDetails
FLYS147

site_idSWS_FT_FI10
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:23512198
ChainResidueDetails
FLYS166

222624

PDB entries from 2024-07-17

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