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7MNW

Crystal Structure of Nup358/RanBP2 Ran-binding domain 1 in complex with Ran-GPPNHP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000054biological_processribosomal subunit export from nucleus
A0000055biological_processribosomal large subunit export from nucleus
A0000056biological_processribosomal small subunit export from nucleus
A0000070biological_processmitotic sister chromatid segregation
A0000278biological_processmitotic cell cycle
A0000287molecular_functionmagnesium ion binding
A0000785cellular_componentchromatin
A0001673cellular_componentmale germ cell nucleus
A0002177cellular_componentmanchette
A0003682molecular_functionchromatin binding
A0003723molecular_functionRNA binding
A0003924molecular_functionGTPase activity
A0003925molecular_functionG protein activity
A0005049molecular_functionnuclear export signal receptor activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005634cellular_componentnucleus
A0005635cellular_componentnuclear envelope
A0005643cellular_componentnuclear pore
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005814cellular_componentcentriole
A0005829cellular_componentcytosol
A0006259biological_processDNA metabolic process
A0006606biological_processprotein import into nucleus
A0006611biological_processprotein export from nucleus
A0006913biological_processnucleocytoplasmic transport
A0007052biological_processmitotic spindle organization
A0007286biological_processspermatid development
A0008104biological_processprotein localization
A0014070biological_processresponse to organic cyclic compound
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0016032biological_processviral process
A0016787molecular_functionhydrolase activity
A0019003molecular_functionGDP binding
A0019904molecular_functionprotein domain specific binding
A0021766biological_processhippocampus development
A0030036biological_processactin cytoskeleton organization
A0030496cellular_componentmidbody
A0031503biological_processprotein-containing complex localization
A0032092biological_processpositive regulation of protein binding
A0032991cellular_componentprotein-containing complex
A0035281biological_processpre-miRNA export from nucleus
A0036126cellular_componentsperm flagellum
A0042307biological_processpositive regulation of protein import into nucleus
A0042470cellular_componentmelanosome
A0042565cellular_componentRNA nuclear export complex
A0044877molecular_functionprotein-containing complex binding
A0045296molecular_functioncadherin binding
A0045505molecular_functiondynein intermediate chain binding
A0046039biological_processGTP metabolic process
A0046872molecular_functionmetal ion binding
A0046982molecular_functionprotein heterodimerization activity
A0051301biological_processcell division
A0055037cellular_componentrecycling endosome
A0061015biological_processsnRNA import into nucleus
A0061676molecular_functionimportin-alpha family protein binding
A0070062cellular_componentextracellular exosome
A0070883molecular_functionpre-miRNA binding
A0071389biological_processcellular response to mineralocorticoid stimulus
A0090543cellular_componentFlemming body
A1902570biological_processprotein localization to nucleolus
B0046907biological_processintracellular transport
C0000054biological_processribosomal subunit export from nucleus
C0000055biological_processribosomal large subunit export from nucleus
C0000056biological_processribosomal small subunit export from nucleus
C0000070biological_processmitotic sister chromatid segregation
C0000278biological_processmitotic cell cycle
C0000287molecular_functionmagnesium ion binding
C0000785cellular_componentchromatin
C0001673cellular_componentmale germ cell nucleus
C0002177cellular_componentmanchette
C0003682molecular_functionchromatin binding
C0003723molecular_functionRNA binding
C0003924molecular_functionGTPase activity
C0003925molecular_functionG protein activity
C0005049molecular_functionnuclear export signal receptor activity
C0005515molecular_functionprotein binding
C0005525molecular_functionGTP binding
C0005634cellular_componentnucleus
C0005635cellular_componentnuclear envelope
C0005643cellular_componentnuclear pore
C0005654cellular_componentnucleoplasm
C0005730cellular_componentnucleolus
C0005737cellular_componentcytoplasm
C0005814cellular_componentcentriole
C0005829cellular_componentcytosol
C0006259biological_processDNA metabolic process
C0006606biological_processprotein import into nucleus
C0006611biological_processprotein export from nucleus
C0006913biological_processnucleocytoplasmic transport
C0007052biological_processmitotic spindle organization
C0007286biological_processspermatid development
C0008104biological_processprotein localization
C0014070biological_processresponse to organic cyclic compound
C0015031biological_processprotein transport
C0016020cellular_componentmembrane
C0016032biological_processviral process
C0016787molecular_functionhydrolase activity
C0019003molecular_functionGDP binding
C0019904molecular_functionprotein domain specific binding
C0021766biological_processhippocampus development
C0030036biological_processactin cytoskeleton organization
C0030496cellular_componentmidbody
C0031503biological_processprotein-containing complex localization
C0032092biological_processpositive regulation of protein binding
C0032991cellular_componentprotein-containing complex
C0035281biological_processpre-miRNA export from nucleus
C0036126cellular_componentsperm flagellum
C0042307biological_processpositive regulation of protein import into nucleus
C0042470cellular_componentmelanosome
C0042565cellular_componentRNA nuclear export complex
C0044877molecular_functionprotein-containing complex binding
C0045296molecular_functioncadherin binding
C0045505molecular_functiondynein intermediate chain binding
C0046039biological_processGTP metabolic process
C0046872molecular_functionmetal ion binding
C0046982molecular_functionprotein heterodimerization activity
C0051301biological_processcell division
C0055037cellular_componentrecycling endosome
C0061015biological_processsnRNA import into nucleus
C0061676molecular_functionimportin-alpha family protein binding
C0070062cellular_componentextracellular exosome
C0070883molecular_functionpre-miRNA binding
C0071389biological_processcellular response to mineralocorticoid stimulus
C0090543cellular_componentFlemming body
C1902570biological_processprotein localization to nucleolus
D0046907biological_processintracellular transport
E0000054biological_processribosomal subunit export from nucleus
E0000055biological_processribosomal large subunit export from nucleus
E0000056biological_processribosomal small subunit export from nucleus
E0000070biological_processmitotic sister chromatid segregation
E0000278biological_processmitotic cell cycle
E0000287molecular_functionmagnesium ion binding
E0000785cellular_componentchromatin
E0001673cellular_componentmale germ cell nucleus
E0002177cellular_componentmanchette
E0003682molecular_functionchromatin binding
E0003723molecular_functionRNA binding
E0003924molecular_functionGTPase activity
E0003925molecular_functionG protein activity
E0005049molecular_functionnuclear export signal receptor activity
E0005515molecular_functionprotein binding
E0005525molecular_functionGTP binding
E0005634cellular_componentnucleus
E0005635cellular_componentnuclear envelope
E0005643cellular_componentnuclear pore
E0005654cellular_componentnucleoplasm
E0005730cellular_componentnucleolus
E0005737cellular_componentcytoplasm
E0005814cellular_componentcentriole
E0005829cellular_componentcytosol
E0006259biological_processDNA metabolic process
E0006606biological_processprotein import into nucleus
E0006611biological_processprotein export from nucleus
E0006913biological_processnucleocytoplasmic transport
E0007052biological_processmitotic spindle organization
E0007286biological_processspermatid development
E0008104biological_processprotein localization
E0014070biological_processresponse to organic cyclic compound
E0015031biological_processprotein transport
E0016020cellular_componentmembrane
E0016032biological_processviral process
E0016787molecular_functionhydrolase activity
E0019003molecular_functionGDP binding
E0019904molecular_functionprotein domain specific binding
E0021766biological_processhippocampus development
E0030036biological_processactin cytoskeleton organization
E0030496cellular_componentmidbody
E0031503biological_processprotein-containing complex localization
E0032092biological_processpositive regulation of protein binding
E0032991cellular_componentprotein-containing complex
E0035281biological_processpre-miRNA export from nucleus
E0036126cellular_componentsperm flagellum
E0042307biological_processpositive regulation of protein import into nucleus
E0042470cellular_componentmelanosome
E0042565cellular_componentRNA nuclear export complex
E0044877molecular_functionprotein-containing complex binding
E0045296molecular_functioncadherin binding
E0045505molecular_functiondynein intermediate chain binding
E0046039biological_processGTP metabolic process
E0046872molecular_functionmetal ion binding
E0046982molecular_functionprotein heterodimerization activity
E0051301biological_processcell division
E0055037cellular_componentrecycling endosome
E0061015biological_processsnRNA import into nucleus
E0061676molecular_functionimportin-alpha family protein binding
E0070062cellular_componentextracellular exosome
E0070883molecular_functionpre-miRNA binding
E0071389biological_processcellular response to mineralocorticoid stimulus
E0090543cellular_componentFlemming body
E1902570biological_processprotein localization to nucleolus
F0046907biological_processintracellular transport
G0000054biological_processribosomal subunit export from nucleus
G0000055biological_processribosomal large subunit export from nucleus
G0000056biological_processribosomal small subunit export from nucleus
G0000070biological_processmitotic sister chromatid segregation
G0000278biological_processmitotic cell cycle
G0000287molecular_functionmagnesium ion binding
G0000785cellular_componentchromatin
G0001673cellular_componentmale germ cell nucleus
G0002177cellular_componentmanchette
G0003682molecular_functionchromatin binding
G0003723molecular_functionRNA binding
G0003924molecular_functionGTPase activity
G0003925molecular_functionG protein activity
G0005049molecular_functionnuclear export signal receptor activity
G0005515molecular_functionprotein binding
G0005525molecular_functionGTP binding
G0005634cellular_componentnucleus
G0005635cellular_componentnuclear envelope
G0005643cellular_componentnuclear pore
G0005654cellular_componentnucleoplasm
G0005730cellular_componentnucleolus
G0005737cellular_componentcytoplasm
G0005814cellular_componentcentriole
G0005829cellular_componentcytosol
G0006259biological_processDNA metabolic process
G0006606biological_processprotein import into nucleus
G0006611biological_processprotein export from nucleus
G0006913biological_processnucleocytoplasmic transport
G0007052biological_processmitotic spindle organization
G0007286biological_processspermatid development
G0008104biological_processprotein localization
G0014070biological_processresponse to organic cyclic compound
G0015031biological_processprotein transport
G0016020cellular_componentmembrane
G0016032biological_processviral process
G0016787molecular_functionhydrolase activity
G0019003molecular_functionGDP binding
G0019904molecular_functionprotein domain specific binding
G0021766biological_processhippocampus development
G0030036biological_processactin cytoskeleton organization
G0030496cellular_componentmidbody
G0031503biological_processprotein-containing complex localization
G0032092biological_processpositive regulation of protein binding
G0032991cellular_componentprotein-containing complex
G0035281biological_processpre-miRNA export from nucleus
G0036126cellular_componentsperm flagellum
G0042307biological_processpositive regulation of protein import into nucleus
G0042470cellular_componentmelanosome
G0042565cellular_componentRNA nuclear export complex
G0044877molecular_functionprotein-containing complex binding
G0045296molecular_functioncadherin binding
G0045505molecular_functiondynein intermediate chain binding
G0046039biological_processGTP metabolic process
G0046872molecular_functionmetal ion binding
G0046982molecular_functionprotein heterodimerization activity
G0051301biological_processcell division
G0055037cellular_componentrecycling endosome
G0061015biological_processsnRNA import into nucleus
G0061676molecular_functionimportin-alpha family protein binding
G0070062cellular_componentextracellular exosome
G0070883molecular_functionpre-miRNA binding
G0071389biological_processcellular response to mineralocorticoid stimulus
G0090543cellular_componentFlemming body
G1902570biological_processprotein localization to nucleolus
H0046907biological_processintracellular transport
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER1249
DSER1249
FSER1249
HSER1249

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AGLU36
CGLU36
EGLU36
GGLU36

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AGLY68
CGLY68
EGLY68
GGLY68

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AASN122
CASN122
EASN122
GASN122

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1K5G, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
ASER150
CSER150
ESER150
GSER150

site_idSWS_FT_FI6
Number of Residues4
DetailsSITE: Essential for GTP hydrolysis => ECO:0000269|PubMed:18591255, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:8636225
ChainResidueDetails
AGLN69
CGLN69
EGLN69
GGLN69

site_idSWS_FT_FI7
Number of Residues4
DetailsMOD_RES: N-acetylalanine => ECO:0000269|Ref.12, ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378
ChainResidueDetails
AALA2
CALA2
EALA2
GALA2

site_idSWS_FT_FI8
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR24
CTHR24
ETHR24
GTHR24

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:31075303
ChainResidueDetails
ALYS37
CLYS37
ELYS37
GLYS37

site_idSWS_FT_FI10
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS60
ALYS99
CLYS60
CLYS99
ELYS60
ELYS99
GLYS60
GLYS99

site_idSWS_FT_FI11
Number of Residues4
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS71
CLYS71
ELYS71
GLYS71

site_idSWS_FT_FI12
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:29040603
ChainResidueDetails
ALYS134
CLYS134
ELYS134
GLYS134

site_idSWS_FT_FI13
Number of Residues4
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62827
ChainResidueDetails
ALYS159
CLYS159
ELYS159
GLYS159

site_idSWS_FT_FI14
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate
ChainResidueDetails
ALYS71
CLYS71
ELYS71
GLYS71

site_idSWS_FT_FI15
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS152
CLYS152
ELYS152
GLYS152

226707

PDB entries from 2024-10-30

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