7M0E
Pre-catalytic synaptic complex of DNA Polymerase Lambda with gapped DSB substrate and incoming dUMPNPP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| A | 0006281 | biological_process | DNA repair |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0034061 | molecular_function | DNA polymerase activity |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| B | 0006281 | biological_process | DNA repair |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0034061 | molecular_function | DNA polymerase activity |
| C | 0003677 | molecular_function | DNA binding |
| C | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| C | 0006281 | biological_process | DNA repair |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0034061 | molecular_function | DNA polymerase activity |
| D | 0003677 | molecular_function | DNA binding |
| D | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| D | 0006281 | biological_process | DNA repair |
| D | 0016779 | molecular_function | nucleotidyltransferase activity |
| D | 0034061 | molecular_function | DNA polymerase activity |
Functional Information from PROSITE/UniProt
| site_id | PS00522 |
| Number of Residues | 20 |
| Details | DNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP |
| Chain | Residue | Details |
| A | GLY416-PRO435 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865 |
| Chain | Residue | Details |
| A | LYS312 | |
| B | LYS312 | |
| C | LYS312 | |
| D | LYS312 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ |
| Chain | Residue | Details |
| A | ARG386 | |
| C | SER417 | |
| C | GLY426 | |
| C | ASN513 | |
| D | ARG386 | |
| D | SER417 | |
| D | GLY426 | |
| D | ASN513 | |
| A | SER417 | |
| A | GLY426 | |
| A | ASN513 | |
| B | ARG386 | |
| B | SER417 | |
| B | GLY426 | |
| B | ASN513 | |
| C | ARG386 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 12 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ |
| Chain | Residue | Details |
| A | ASP427 | |
| D | ASP427 | |
| D | ASP429 | |
| D | ASP490 | |
| A | ASP429 | |
| A | ASP490 | |
| B | ASP427 | |
| B | ASP429 | |
| B | ASP490 | |
| C | ASP427 | |
| C | ASP429 | |
| C | ASP490 |
