6VAX
Crystal structure of human SDHA-SDHAF2 assembly intermediate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005730 | cellular_component | nucleolus |
A | 0005739 | cellular_component | mitochondrion |
A | 0005743 | cellular_component | mitochondrial inner membrane |
A | 0005749 | cellular_component | obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) |
A | 0005759 | cellular_component | mitochondrial matrix |
A | 0006099 | biological_process | tricarboxylic acid cycle |
A | 0006105 | biological_process | succinate metabolic process |
A | 0006121 | biological_process | mitochondrial electron transport, succinate to ubiquinone |
A | 0007399 | biological_process | nervous system development |
A | 0008177 | molecular_function | succinate dehydrogenase (quinone) activity |
A | 0009055 | molecular_function | electron transfer activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
A | 0022900 | biological_process | electron transport chain |
A | 0022904 | biological_process | respiratory electron transport chain |
A | 0042776 | biological_process | proton motive force-driven mitochondrial ATP synthesis |
A | 0045257 | cellular_component | obsolete succinate dehydrogenase complex (ubiquinone) |
A | 0045273 | cellular_component | respiratory chain complex II (succinate dehydrogenase) |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0005515 | molecular_function | protein binding |
B | 0005730 | cellular_component | nucleolus |
B | 0005739 | cellular_component | mitochondrion |
B | 0005759 | cellular_component | mitochondrial matrix |
B | 0005829 | cellular_component | cytosol |
B | 0006099 | biological_process | tricarboxylic acid cycle |
B | 0006121 | biological_process | mitochondrial electron transport, succinate to ubiquinone |
B | 0006470 | biological_process | protein dephosphorylation |
B | 0010719 | biological_process | negative regulation of epithelial to mesenchymal transition |
B | 0018293 | biological_process | protein-FAD linkage |
B | 0034553 | biological_process | mitochondrial respiratory chain complex II assembly |
B | 0090090 | biological_process | negative regulation of canonical Wnt signaling pathway |
C | 0005515 | molecular_function | protein binding |
C | 0005730 | cellular_component | nucleolus |
C | 0005739 | cellular_component | mitochondrion |
C | 0005743 | cellular_component | mitochondrial inner membrane |
C | 0005749 | cellular_component | obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) |
C | 0005759 | cellular_component | mitochondrial matrix |
C | 0006099 | biological_process | tricarboxylic acid cycle |
C | 0006105 | biological_process | succinate metabolic process |
C | 0006121 | biological_process | mitochondrial electron transport, succinate to ubiquinone |
C | 0007399 | biological_process | nervous system development |
C | 0008177 | molecular_function | succinate dehydrogenase (quinone) activity |
C | 0009055 | molecular_function | electron transfer activity |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
C | 0022900 | biological_process | electron transport chain |
C | 0022904 | biological_process | respiratory electron transport chain |
C | 0042776 | biological_process | proton motive force-driven mitochondrial ATP synthesis |
C | 0045257 | cellular_component | obsolete succinate dehydrogenase complex (ubiquinone) |
C | 0045273 | cellular_component | respiratory chain complex II (succinate dehydrogenase) |
C | 0050660 | molecular_function | flavin adenine dinucleotide binding |
D | 0005515 | molecular_function | protein binding |
D | 0005730 | cellular_component | nucleolus |
D | 0005739 | cellular_component | mitochondrion |
D | 0005759 | cellular_component | mitochondrial matrix |
D | 0005829 | cellular_component | cytosol |
D | 0006099 | biological_process | tricarboxylic acid cycle |
D | 0006121 | biological_process | mitochondrial electron transport, succinate to ubiquinone |
D | 0006470 | biological_process | protein dephosphorylation |
D | 0010719 | biological_process | negative regulation of epithelial to mesenchymal transition |
D | 0018293 | biological_process | protein-FAD linkage |
D | 0034553 | biological_process | mitochondrial respiratory chain complex II assembly |
D | 0090090 | biological_process | negative regulation of canonical Wnt signaling pathway |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 32 |
Details | binding site for residue FAD A 701 |
Chain | Residue |
A | GLY68 |
A | HIS99 |
A | THR100 |
A | ALA103 |
A | GLY105 |
A | GLY106 |
A | TYR219 |
A | ALA221 |
A | ALA255 |
A | THR256 |
A | GLY257 |
A | ALA69 |
A | SER268 |
A | ASP275 |
A | HIS407 |
A | TYR408 |
A | GLY439 |
A | GLU440 |
A | ALA454 |
A | SER456 |
A | LEU457 |
A | LEU460 |
A | GLY70 |
A | OAA702 |
A | HOH803 |
A | HOH819 |
A | GLY71 |
A | ALA72 |
A | THR91 |
A | LYS92 |
A | LEU93 |
A | SER98 |
site_id | AC2 |
Number of Residues | 8 |
Details | binding site for residue OAA A 702 |
Chain | Residue |
A | PHE173 |
A | HIS296 |
A | LEU306 |
A | ARG340 |
A | HIS407 |
A | ARG451 |
A | ALA454 |
A | FAD701 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MLI A 703 |
Chain | Residue |
A | HIS621 |
A | ARG623 |
A | PRO643 |
A | VAL644 |
A | ASP646 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue GOL A 704 |
Chain | Residue |
A | PHE295 |
A | ASP341 |
A | ALA591 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue K A 705 |
Chain | Residue |
A | ASN409 |
A | MET410 |
A | GLY411 |
A | GLU440 |
A | ALA442 |
A | HOH801 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue EDO A 706 |
Chain | Residue |
A | ASP131 |
A | SER588 |
A | ARG589 |
A | ARG600 |
A | ARG662 |
A | TYR664 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue EDO A 707 |
Chain | Residue |
A | ARG600 |
A | ILE601 |
A | ASP602 |
A | TYR604 |
A | ASP605 |
A | LYS616 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue EDO A 708 |
Chain | Residue |
A | GLU583 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue EDO A 709 |
Chain | Residue |
A | THR638 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue GOL C 701 |
Chain | Residue |
C | ARG623 |
C | PRO643 |
C | VAL644 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue OAA C 703 |
Chain | Residue |
C | HIS296 |
C | LEU306 |
C | ARG340 |
C | HIS407 |
C | ARG451 |
C | FAD702 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue K C 704 |
Chain | Residue |
C | ASN409 |
C | MET410 |
C | GLY411 |
C | GLU440 |
C | ALA442 |
C | HOH806 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue EDO C 705 |
Chain | Residue |
C | THR638 |
C | GLU640 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue EDO C 706 |
Chain | Residue |
C | GLN533 |
C | CYS536 |
C | GLU583 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue EDO C 707 |
Chain | Residue |
C | ARG75 |
C | GLY79 |
C | GLU82 |
C | GLU472 |
C | HOH803 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue EDO C 708 |
Chain | Residue |
C | ASP131 |
C | SER588 |
C | LYS598 |
C | ARG600 |
C | ARG662 |
C | TYR664 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue EDO C 709 |
Chain | Residue |
C | ASP341 |
C | VAL525 |
C | ALA591 |
site_id | AD9 |
Number of Residues | 33 |
Details | binding site for Di-peptide FAD C 702 and HIS C 99 |
Chain | Residue |
C | GLY68 |
C | ALA69 |
C | GLY70 |
C | GLY71 |
C | ALA72 |
C | THR91 |
C | LYS92 |
C | LEU93 |
C | SER98 |
C | THR100 |
C | VAL101 |
C | ALA102 |
C | ALA103 |
C | GLY105 |
C | GLY106 |
C | TYR219 |
C | ALA221 |
C | ALA255 |
C | THR256 |
C | GLY257 |
C | THR267 |
C | SER268 |
C | ASP275 |
C | TYR408 |
C | GLY439 |
C | GLU440 |
C | ALA454 |
C | SER456 |
C | LEU457 |
C | LEU460 |
C | OAA703 |
C | HOH804 |
D | GLY78 |
Functional Information from PROSITE/UniProt
site_id | PS00504 |
Number of Residues | 10 |
Details | FRD_SDH_FAD_BINDING Fumarate reductase / succinate dehydrogenase FAD-binding site. RSHTvaAqGG |
Chain | Residue | Details |
A | ARG97-GLY106 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:Q9YHT1 |
Chain | Residue | Details |
A | ARG340 | |
C | ARG340 |
site_id | SWS_FT_FI2 |
Number of Residues | 18 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:Q0QF01 |
Chain | Residue | Details |
A | GLY68 | |
C | GLY68 | |
C | THR91 | |
C | ASP275 | |
C | HIS296 | |
C | THR308 | |
C | HIS407 | |
C | GLU440 | |
C | ARG451 | |
C | SER456 | |
A | THR91 | |
A | ASP275 | |
A | HIS296 | |
A | THR308 | |
A | HIS407 | |
A | GLU440 | |
A | ARG451 | |
A | SER456 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: Tele-8alpha-FAD histidine => ECO:0000250|UniProtKB:Q0QF01 |
Chain | Residue | Details |
A | HIS99 | |
C | HIS99 |
site_id | SWS_FT_FI4 |
Number of Residues | 18 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q8K2B3 |
Chain | Residue | Details |
A | LYS167 | |
C | LYS167 | |
C | LYS182 | |
C | LYS480 | |
C | LYS517 | |
C | LYS550 | |
C | LYS598 | |
C | LYS624 | |
C | LYS636 | |
C | LYS647 | |
A | LYS182 | |
A | LYS480 | |
A | LYS517 | |
A | LYS550 | |
A | LYS598 | |
A | LYS624 | |
A | LYS636 | |
A | LYS647 |
site_id | SWS_FT_FI5 |
Number of Residues | 14 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q8K2B3 |
Chain | Residue | Details |
A | LYS179 | |
C | LYS335 | |
C | LYS485 | |
C | LYS498 | |
C | LYS538 | |
C | LYS547 | |
A | LYS250 | |
A | LYS335 | |
A | LYS485 | |
A | LYS498 | |
A | LYS538 | |
A | LYS547 | |
C | LYS179 | |
C | LYS250 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine; by SRC => ECO:0000269|PubMed:22823520 |
Chain | Residue | Details |
A | TYR215 | |
C | TYR215 |
site_id | SWS_FT_FI7 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS541 | |
A | LYS608 | |
C | LYS541 | |
C | LYS608 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q8K2B3 |
Chain | Residue | Details |
A | LYS615 | |
C | LYS615 |