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6P08

Ternary structure of the E52D mutant of ANT-4'' with Neomycin, AMP and Pyrophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0046677biological_processresponse to antibiotic
D0016740molecular_functiontransferase activity
D0016779molecular_functionnucleotidyltransferase activity
D0046677biological_processresponse to antibiotic
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue PPV A 302
ChainResidue
AGLY38
DHOH944
ASER39
AARG42
ASER49
ATHR187
AMG304
AAMP306
AHOH982
DLYS149

site_idAC2
Number of Residues9
Detailsbinding site for residue MG A 303
ChainResidue
AASP50
AASP52
ANMY301
AMG304
AAMP306
AHOH901
AHOH911
AHOH913
DGLU145

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 304
ChainResidue
AASP50
AASP52
APPV302
AMG303
AAMP306
AHOH927

site_idAC4
Number of Residues8
Detailsbinding site for residue MG A 308
ChainResidue
AGLU145
AAMP305
ANMY307
DASP50
DASP52
DMG302
DHOH914
DHOH923

site_idAC5
Number of Residues15
Detailsbinding site for residue PPV D 301
ChainResidue
ALYS149
AAMP305
DGLY38
DSER39
DARG42
DSER49
DTHR187
DMG302
DHOH901
DHOH902
DHOH904
DHOH906
DHOH909
DHOH932
DHOH972

site_idAC6
Number of Residues7
Detailsbinding site for residue MG D 302
ChainResidue
AAMP305
AMG308
DASP50
DASP52
DPPV301
DHOH901
DHOH902

site_idAC7
Number of Residues29
Detailsbinding site for residues NMY A 301 and AMP A 306
ChainResidue
ATYR37
AGLY38
AARG42
AASP50
AASP52
AGLU63
AGLU67
AGLU76
AASP80
ALEU85
ATYR88
ALEU98
ATHR99
AGLN102
ATHR186
APPV302
AMG303
AMG304
AHOH901
AHOH906
AHOH909
AHOH912
AHOH924
AHOH950
AHOH969
AHOH982
DGLU141
DGLU145
DLYS149

site_idAC8
Number of Residues27
Detailsbinding site for residues AMP A 305 and NMY A 307
ChainResidue
DASP50
DASP52
DGLU63
DGLU67
DGLU76
DASP80
DTYR88
DTHR99
DGLN102
DPPV301
DMG302
DHOH949
AGLU141
AGLU145
ALYS149
AMG308
AHOH907
AHOH930
AHOH932
AHOH949
AHOH952
AHOH975
AHOH988
AHOH993
DTYR37
DGLY38
DARG42

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PDB entries from 2024-07-17

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