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6KDB

Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpT site

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
D0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue SAH A 901
ChainResidue
APHE581
AVAL628
AGLY648
APRO650
AARG832
ASER833
ATRP834
AHOH1011
AHOH1032
AHOH1035
AASP582
AGLY583
AILE584
ATHR586
ASER604
AGLU605
AVAL606
AASP627

site_idAC2
Number of Residues19
Detailsbinding site for residue SAH D 901
ChainResidue
DPHE581
DASP582
DGLY583
DILE584
DTHR586
DSER604
DGLU605
DVAL606
DASP627
DVAL628
DGLY648
DPRO650
DARG832
DSER833
DTRP834
DHOH1006
DHOH1012
DHOH1024
DHOH1032

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DlVigGsPCnDLS
ChainResidueDetails
AASP643-SER655

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01016, ECO:0000255|PROSITE-ProRule:PRU10018
ChainResidueDetails
ACYS651
DCYS651

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q9Y6K1
ChainResidueDetails
AASP582
AGLU605
AASP627
AARG832
DASP582
DGLU605
DASP627
DARG832

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS617
DLYS617

220113

PDB entries from 2024-05-22

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