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6F57

Crystal structure of DNMT3A-DNMT3L in complex with single CpG-containing DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
D0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue SAH A 1001
ChainResidue
APHE640
AVAL687
AGLY707
APRO709
ALEU730
AARG891
ASER892
ATRP893
AASP641
AGLY642
AILE643
ATHR645
ASER663
AGLU664
ACYS666
AASP686

site_idAC2
Number of Residues13
Detailsbinding site for residue SAH D 1001
ChainResidue
DPHE640
DASP641
DGLY642
DTHR645
DGLU664
DCYS666
DASP686
DVAL687
DGLY707
DLEU730
DARG891
DSER892
DTRP893

site_idAC3
Number of Residues18
Detailsbinding site for Di-nucleotide DG F 426 and Z F 427
ChainResidue
ASER708
ACYS710
ASER714
AILE715
AVAL716
AGLU756
AVAL758
AARG790
AARG792
AARG831
ATHR832
ATHR834
AGLY890
EDG408
EDC409
EDA410
FDT425
FDG428

site_idAC4
Number of Residues19
Detailsbinding site for Di-nucleotide Z F 427 and DG F 428
ChainResidue
ASER708
ACYS710
AASN711
ASER714
AVAL716
AASN717
APRO718
AGLU756
AVAL758
AARG790
AARG792
ATHR834
ATHR835
AARG836
AGLY890
EDG406
EDC407
FDG426
FDC429

site_idAC5
Number of Residues17
Detailsbinding site for Di-nucleotide DG H 426 and Z H 427
ChainResidue
DSER708
DCYS710
DSER714
DILE715
DVAL716
DGLU756
DVAL758
DARG790
DARG792
DARG831
DTHR832
DGLY890
DSER892
GDG408
GDC409
HDT425
HDG428

site_idAC6
Number of Residues20
Detailsbinding site for Di-nucleotide Z H 427 and DG H 428
ChainResidue
GDG406
GDC407
HDG426
HDC429
DSER708
DCYS710
DASN711
DSER714
DVAL716
DASN717
DPRO718
DGLU756
DVAL758
DARG790
DARG792
DTHR834
DTHR835
DARG836
DGLY890
DSER892

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DlVigGsPCnDLS
ChainResidueDetails
AASP702-SER714

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01016, ECO:0000255|PROSITE-ProRule:PRU10018
ChainResidueDetails
ACYS710
DCYS710

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:17713477, ECO:0007744|PDB:2QRV
ChainResidueDetails
AASP641
AGLU664
AASP686
AARG891
DASP641
DGLU664
DASP686
DARG891

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: S-methylcysteine; by autocatalysis => ECO:0000250|UniProtKB:O88508
ChainResidueDetails
ACYS710
DCYS710

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PDB entries from 2024-07-17

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