6CBX
Crystal structure of human SET and MYND Domain Containing protein 2 with MTF1497
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
A | 0000993 | molecular_function | RNA polymerase II complex binding |
A | 0002039 | molecular_function | p53 binding |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006325 | biological_process | chromatin organization |
A | 0006338 | biological_process | chromatin remodeling |
A | 0007507 | biological_process | heart development |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0008285 | biological_process | negative regulation of cell population proliferation |
A | 0016278 | molecular_function | lysine N-methyltransferase activity |
A | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
A | 0018026 | biological_process | peptidyl-lysine monomethylation |
A | 0018027 | biological_process | peptidyl-lysine dimethylation |
A | 0032259 | biological_process | methylation |
A | 0042054 | molecular_function | histone methyltransferase activity |
A | 0043516 | biological_process | regulation of DNA damage response, signal transduction by p53 class mediator |
A | 0046872 | molecular_function | metal ion binding |
A | 0046975 | molecular_function | histone H3K36 methyltransferase activity |
A | 0140938 | molecular_function | histone H3 methyltransferase activity |
A | 0140999 | molecular_function | histone H3K4 trimethyltransferase activity |
A | 1901796 | biological_process | regulation of signal transduction by p53 class mediator |
B | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
B | 0000993 | molecular_function | RNA polymerase II complex binding |
B | 0002039 | molecular_function | p53 binding |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006325 | biological_process | chromatin organization |
B | 0006338 | biological_process | chromatin remodeling |
B | 0007507 | biological_process | heart development |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0008285 | biological_process | negative regulation of cell population proliferation |
B | 0016278 | molecular_function | lysine N-methyltransferase activity |
B | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
B | 0018026 | biological_process | peptidyl-lysine monomethylation |
B | 0018027 | biological_process | peptidyl-lysine dimethylation |
B | 0032259 | biological_process | methylation |
B | 0042054 | molecular_function | histone methyltransferase activity |
B | 0043516 | biological_process | regulation of DNA damage response, signal transduction by p53 class mediator |
B | 0046872 | molecular_function | metal ion binding |
B | 0046975 | molecular_function | histone H3K36 methyltransferase activity |
B | 0140938 | molecular_function | histone H3 methyltransferase activity |
B | 0140999 | molecular_function | histone H3K4 trimethyltransferase activity |
B | 1901796 | biological_process | regulation of signal transduction by p53 class mediator |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1001 |
Chain | Residue |
A | CYS52 |
A | CYS55 |
A | CYS74 |
A | CYS78 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1002 |
Chain | Residue |
A | CYS65 |
A | CYS68 |
A | HIS86 |
A | CYS90 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1003 |
Chain | Residue |
A | CYS262 |
A | CYS264 |
A | CYS267 |
A | CYS209 |
site_id | AC4 |
Number of Residues | 17 |
Details | binding site for residue EW1 A 1004 |
Chain | Residue |
A | GLY16 |
A | LYS17 |
A | GLU135 |
A | HIS137 |
A | CYS181 |
A | ASN182 |
A | GLY183 |
A | PHE184 |
A | ALA203 |
A | ASN206 |
A | HIS207 |
A | TYR240 |
A | TYR258 |
A | PHE260 |
A | GLU263 |
A | HOH1157 |
A | HOH1214 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue CL A 1005 |
Chain | Residue |
A | ILE241 |
A | ASP242 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue EDO A 1006 |
Chain | Residue |
A | PRO37 |
A | ALA38 |
A | LYS115 |
A | THR123 |
A | PRO124 |
A | SER125 |
A | HOH1166 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue EDO A 1007 |
Chain | Residue |
A | ASP242 |
A | TYR245 |
A | TYR370 |
A | TYR374 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue ZN B 1001 |
Chain | Residue |
B | CYS52 |
B | CYS55 |
B | CYS74 |
B | CYS78 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue ZN B 1002 |
Chain | Residue |
B | CYS65 |
B | CYS68 |
B | HIS86 |
B | CYS90 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue ZN B 1003 |
Chain | Residue |
B | CYS209 |
B | CYS262 |
B | CYS264 |
B | CYS267 |
site_id | AD2 |
Number of Residues | 17 |
Details | binding site for residue EW1 B 1004 |
Chain | Residue |
B | GLY16 |
B | LYS17 |
B | GLU135 |
B | HIS137 |
B | CYS181 |
B | ASN182 |
B | GLY183 |
B | PHE184 |
B | ALA203 |
B | ASN206 |
B | HIS207 |
B | TYR240 |
B | TYR258 |
B | PHE260 |
B | GLU263 |
B | HOH1154 |
B | HOH1185 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue CL B 1005 |
Chain | Residue |
B | ILE241 |
B | ASP242 |
B | ARG253 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue EDO B 1006 |
Chain | Residue |
A | SER329 |
B | ARG67 |
B | LYS87 |
B | SER91 |
B | HIS163 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue EDO B 1007 |
Chain | Residue |
A | HIS157 |
B | HIS158 |
B | HOH1105 |
B | HOH1153 |
Functional Information from PROSITE/UniProt
site_id | PS01360 |
Number of Residues | 40 |
Details | ZF_MYND_1 Zinc finger MYND-type signature. Hcey.Cftrkeglsk........CgrCkqafYCnveCqkedwpm..Hkle.C |
Chain | Residue | Details |
A | HIS51-CYS90 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 76 |
Details | ZN_FING: MYND-type => ECO:0000255|PROSITE-ProRule:PRU00134 |
Chain | Residue | Details |
A | CYS52-CYS90 | |
B | CYS52-CYS90 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: |
Chain | Residue | Details |
A | LYS17 | |
A | ASN206 | |
A | TYR258 | |
B | LYS17 | |
B | ASN206 | |
B | TYR258 |
site_id | SWS_FT_FI3 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00134 |
Chain | Residue | Details |
A | CYS52 | |
B | CYS55 | |
B | CYS65 | |
B | CYS68 | |
B | CYS74 | |
B | CYS78 | |
B | HIS86 | |
B | CYS90 | |
A | CYS55 | |
A | CYS65 | |
A | CYS68 | |
A | CYS74 | |
A | CYS78 | |
A | HIS86 | |
A | CYS90 | |
B | CYS52 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00190, ECO:0000269|PubMed:21724641 |
Chain | Residue | Details |
A | HIS137 | |
B | HIS137 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER283 | |
B | SER283 |