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5XHS

Crystal structure of SIRT5 complexed with a fluorogenic small-molecule substrate SuBKA

Functional Information from GO Data
ChainGOidnamespacecontents
A0036054molecular_functionprotein-malonyllysine demalonylase activity
A0036055molecular_functionprotein-succinyllysine desuccinylase activity
A0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 404
ChainResidue
ACYS166
ACYS169
ACYS207
ACYS212

site_idAC2
Number of Residues14
Detailsbinding site for residues PHQ A 401 and SLL A 402
ChainResidue
ATRP222
APHE223
AGLY224
ALEU232
AASP236
ATYR255
APHE260
AMCM403
AMCM403
ATYR102
AARG105
AILE142
AHIS158
AVAL221

site_idAC3
Number of Residues14
Detailsbinding site for residues SLL A 402 and MCM A 403
ChainResidue
ATYR102
AARG105
AILE142
AHIS158
AVAL221
ATRP222
AGLU225
AASN226
ALEU227
ALEU232
ATYR255
AMET259
APHQ401
APHQ401

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:22076378, ECO:0000269|PubMed:29180469
ChainResidueDetails
AHIS158

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03160, ECO:0000269|PubMed:22076378, ECO:0000269|PubMed:22767592, ECO:0000269|Ref.19
ChainResidueDetails
AGLY58
AGLN140
AGLY249
AASN275
ACYS293

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03160
ChainResidueDetails
ATYR102
AARG105
ACYS166
ACYS169
ACYS207
ACYS212

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PDB entries from 2024-07-24

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