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5VMZ

Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 701
ChainResidue
ACYS496
ACYS499
AHIS512
AHIS516

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 702
ChainResidue
ACYS524
ACYS527
AHIS540
AHIS544

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 703
ChainResidue
ACYS555
AHIS568
AHIS573
ACYS552

site_idAC4
Number of Residues6
Detailsbinding site for residue CL A 704
ChainResidue
AARG548
AARG548
AARG590
AARG590
AHOH827
AHOH827

site_idAC5
Number of Residues15
Detailsbinding site for residue TLA A 705
ChainResidue
ALYS539
ATYR550
AASN561
ATYR562
AGLN563
AHOH801
AHOH815
AHOH816
AHOH821
AHOH828
AHOH829
DDC6
DDC7
EDG30
EHOH106

Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues21
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Civ..CkrsYvcltslrrHfni..H
ChainResidueDetails
ACYS496-HIS516
ACYS524-HIS544
ACYS552-HIS573

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues22
DetailsZN_FING: C2H2-type 1 => ECO:0000255|PROSITE-ProRule:PRU00042
ChainResidueDetails
ATYR494-HIS516

site_idSWS_FT_FI2
Number of Residues22
DetailsZN_FING: C2H2-type 2 => ECO:0000255|PROSITE-ProRule:PRU00042
ChainResidueDetails
ATYR522-HIS544

site_idSWS_FT_FI3
Number of Residues23
DetailsZN_FING: C2H2-type 3 => ECO:0000255|PROSITE-ProRule:PRU00042
ChainResidueDetails
ATYR550-HIS573

site_idSWS_FT_FI4
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS474
ALYS539
ALYS570

site_idSWS_FT_FI5
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS479
ALYS582

222036

PDB entries from 2024-07-03

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