5VMZ
Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 701 |
| Chain | Residue |
| A | CYS496 |
| A | CYS499 |
| A | HIS512 |
| A | HIS516 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 702 |
| Chain | Residue |
| A | CYS524 |
| A | CYS527 |
| A | HIS540 |
| A | HIS544 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 703 |
| Chain | Residue |
| A | CYS555 |
| A | HIS568 |
| A | HIS573 |
| A | CYS552 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue CL A 704 |
| Chain | Residue |
| A | ARG548 |
| A | ARG548 |
| A | ARG590 |
| A | ARG590 |
| A | HOH827 |
| A | HOH827 |
| site_id | AC5 |
| Number of Residues | 15 |
| Details | binding site for residue TLA A 705 |
| Chain | Residue |
| A | LYS539 |
| A | TYR550 |
| A | ASN561 |
| A | TYR562 |
| A | GLN563 |
| A | HOH801 |
| A | HOH815 |
| A | HOH816 |
| A | HOH821 |
| A | HOH828 |
| A | HOH829 |
| D | DC6 |
| D | DC7 |
| E | DG30 |
| E | HOH106 |
Functional Information from PROSITE/UniProt
| site_id | PS00028 |
| Number of Residues | 21 |
| Details | ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Civ..CkrsYvcltslrrHfni..H |
| Chain | Residue | Details |
| A | CYS496-HIS516 | |
| A | CYS524-HIS544 | |
| A | CYS552-HIS573 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 22 |
| Details | Zinc finger: {"description":"C2H2-type 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00042","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 22 |
| Details | Zinc finger: {"description":"C2H2-type 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00042","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 23 |
| Details | Zinc finger: {"description":"C2H2-type 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00042","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"25218447","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
