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5VAJ

BhRNase H - amide-RNA/DNA complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
B0003676molecular_functionnucleic acid binding
B0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue GOL C 101
ChainResidue
CG8
CA9
CHOH203

site_idAC2
Number of Residues3
Detailsbinding site for residue GOL D 101
ChainResidue
DDG7
DDG8
DDT9

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 201
ChainResidue
BGLU62
BILE63
BTRP65
AASN152
AALA156
AHOH342

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 202
ChainResidue
ATYR83
ALEU111
AHIS115
AARG118
AGLU164
AALA165
AHOH319

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 203
ChainResidue
AHIS115
AARG118
ATYR119
AARG123
AGLU167
AASN170
AHOH301

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 204
ChainResidue
AGLY73
ASER74
AGLN75
AGLU82
AHOH353

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 205
ChainResidue
ALYS143
AHIS172
ATHR173
ATYR174

site_idAC8
Number of Residues6
Detailsbinding site for residue MG A 206
ChainResidue
AASP71
AGLU109
AASN132
AHOH336
CA9
CURU10

site_idAC9
Number of Residues4
Detailsbinding site for residue MG A 207
ChainResidue
AASP71
AASP192
AHOH334
CURU10

site_idAD1
Number of Residues3
Detailsbinding site for residue ACT A 208
ChainResidue
AGLY76
AASN77
APRO78

site_idAD2
Number of Residues6
Detailsbinding site for residue GOL B 201
ChainResidue
BTYR83
BARG97
BHIS115
BARG118
BGLU164
BHOH308

site_idAD3
Number of Residues7
Detailsbinding site for residue GOL B 202
ChainResidue
BVAL93
BGLU96
BARG118
BGLU164
BTRP168
BHIS172
BHOH325

site_idAD4
Number of Residues6
Detailsbinding site for residue MG B 203
ChainResidue
BASP71
BGLU109
BASN132
BHOH326
CA4
CC5

site_idAD5
Number of Residues4
Detailsbinding site for residue MG B 204
ChainResidue
BASP71
BASP192
BHOH310
CC5

site_idAD6
Number of Residues5
Detailsbinding site for residue ACT B 205
ChainResidue
BGLU122
BARG123
BARG151
BASP163
BHOH353

site_idAD7
Number of Residues2
Detailsbinding site for residue ACT B 206
ChainResidue
BGLU167
BHOH333

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15989951","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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