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5SXG

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
B0003824molecular_functioncatalytic activity
B0008270molecular_functionzinc ion binding
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
AHIS253
ACYS284
ACYS289
AHOH503

site_idAC2
Number of Residues11
Detailsbinding site for residue PDO A 402
ChainResidue
AGLU255
ASER282
ACYS284
ATYR313
AHOH503
AHOH554
AARG212
AGLN213
ATHR214
AASN240
AHIS253

site_idAC3
Number of Residues3
Detailsbinding site for residue IMD A 403
ChainResidue
ALYS308
ATYR343
AHOH505

site_idAC4
Number of Residues6
Detailsbinding site for residue PDO A 404
ChainResidue
AARG212
AGLN213
AASN240
AGLU241
ASER250
AGLY251

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BHIS253
BCYS284
BCYS289
BHOH509

site_idAC6
Number of Residues9
Detailsbinding site for residue PDO B 402
ChainResidue
BARG212
BTHR214
BASN240
BHIS253
BSER282
BCYS284
BTYR313
BHOH509
BHOH534

site_idAC7
Number of Residues2
Detailsbinding site for residue PDO B 403
ChainResidue
BGLU342
BHOH531

site_idAC8
Number of Residues6
Detailsbinding site for residue PDO B 404
ChainResidue
BASP314
BTYR319
BLEU369
BARG372
BHOH518
BHOH553

site_idAC9
Number of Residues3
Detailsbinding site for residue PDO B 405
ChainResidue
BVAL208
BARG210
BTRP281

Functional Information from PROSITE/UniProt
site_idPS00903
Number of Residues41
DetailsCYT_DCMP_DEAMINASES_1 Cytidine and deoxycytidylate deaminases zinc-binding region signature. HAElrFLdlvpslqldpaqiyrvtwfisws..........PCfswg....CageV
ChainResidueDetails
AHIS253-VAL293

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255
ChainResidueDetails
APRO263
BPRO263

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALEU261
AGLU292
ALEU297
BLEU261
BGLU292
BLEU297

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PDB entries from 2024-04-24

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