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5O6H

Human NMT1 in complex with myristoyl-CoA and inhibitor IMP-917

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues34
Detailsbinding site for residue MYA A 2001
ChainResidue
ATYR117
ALEU248
ACYS249
AVAL250
AARG255
ASER256
ALYS257
AARG258
AVAL259
AALA260
APRO261
AGLN118
ATHR268
AVAL271
APHE277
ATYR281
ATHR282
ALEU287
ATYR479
AMG2006
AHOH2130
AHOH2199
APHE119
AHOH2203
AHOH2274
AHOH2320
AHOH2388
AHOH2391
ATRP120
AASN179
ATYR180
AVAL181
AASN246
APHE247

site_idAC2
Number of Residues8
Detailsbinding site for residue PO4 A 2002
ChainResidue
AGLU139
ALYS142
AHOH2156
AHOH2174
AHOH2188
AHOH2237
AHOH2242
AHOH2350

site_idAC3
Number of Residues10
Detailsbinding site for residue PO4 A 2003
ChainResidue
ATYR150
ATHR151
AVAL262
AARG265
AALA336
AGLY337
ALEU338
ADMS2008
AHOH2116
AHOH2152

site_idAC4
Number of Residues9
Detailsbinding site for residue PO4 A 2004
ChainResidue
AGLN118
APHE119
AARG258
APRO261
AARG265
ALYS334
AHOH2119
AHOH2163
AHOH2434

site_idAC5
Number of Residues15
Detailsbinding site for residue 9M2 A 2005
ChainResidue
AVAL181
APHE188
APHE190
ATYR192
AASN246
ATHR282
ATYR296
ASER405
ATYR420
AASN451
AALA452
ALEU495
AGLN496
AHOH2138
AHOH2317

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 2006
ChainResidue
ALEU254
ASER256
ALYS257
AARG258
AVAL259
AMYA2001

site_idAC7
Number of Residues10
Detailsbinding site for residue GOL A 2007
ChainResidue
APRO126
ALYS289
AVAL291
ATYR477
ALEU478
ATRP481
ALYS482
ACYS483
ASER485
AHOH2145

site_idAC8
Number of Residues4
Detailsbinding site for residue DMS A 2008
ChainResidue
ALEU338
APO42003
AHOH2187
AHOH2342

site_idAC9
Number of Residues35
Detailsbinding site for residue MYA B 2001
ChainResidue
BPHE119
BTRP120
BASN179
BTYR180
BVAL181
BASN246
BPHE247
BLEU248
BCYS249
BVAL250
BARG255
BSER256
BLYS257
BARG258
BVAL259
BALA260
BPRO261
BTHR268
BVAL271
BPHE277
BTHR282
BLEU287
BTYR479
BMG2008
BHOH2145
BHOH2160
BHOH2212
BHOH2287
BHOH2311
BHOH2371
BHOH2411
BHOH2471
BARG115
BTYR117
BGLN118

site_idAD1
Number of Residues9
Detailsbinding site for residue PO4 B 2002
ChainResidue
BGLU139
BLYS142
BHOH2108
BHOH2190
BHOH2205
BHOH2275
BHOH2284
BHOH2307
BHOH2315

site_idAD2
Number of Residues11
Detailsbinding site for residue PO4 B 2003
ChainResidue
BTYR150
BTHR151
BVAL262
BARG265
BALA336
BGLY337
BLEU338
BGOL2010
BHOH2115
BHOH2126
BHOH2324

site_idAD3
Number of Residues8
Detailsbinding site for residue PO4 B 2004
ChainResidue
BGLN118
BPHE119
BARG258
BPRO261
BARG265
BLYS334
BHOH2104
BHOH2399

site_idAD4
Number of Residues5
Detailsbinding site for residue PO4 B 2005
ChainResidue
BARG166
BLYS170
BARG355
BHOH2144
BHOH2421

site_idAD5
Number of Residues5
Detailsbinding site for residue PO4 B 2006
ChainResidue
BGLU372
BHIS373
BHOH2129
BHOH2292
BHOH2422

site_idAD6
Number of Residues16
Detailsbinding site for residue 9M2 B 2007
ChainResidue
BVAL181
BPHE188
BPHE190
BTYR192
BASN246
BTHR282
BTYR296
BSER405
BTYR420
BASN451
BALA452
BLEU453
BLEU495
BGLN496
BHOH2131
BHOH2258

site_idAD7
Number of Residues6
Detailsbinding site for residue MG B 2008
ChainResidue
BLEU254
BSER256
BLYS257
BARG258
BVAL259
BMYA2001

site_idAD8
Number of Residues10
Detailsbinding site for residue GOL B 2009
ChainResidue
BPRO126
BLYS289
BPRO290
BVAL291
BTYR477
BLEU478
BTRP481
BLYS482
BCYS483
BSER485

site_idAD9
Number of Residues6
Detailsbinding site for residue GOL B 2010
ChainResidue
BLEU338
BPRO340
BPHE385
BPO42003
BHOH2465
BHOH2477

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AGLN118
AARG258
AVAL259
AALA260
BGLN118
BARG258
BVAL259
BALA260

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32103017, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
APHE119
BSER256
ATRP120
ALEU248
AVAL250
ASER256
BPHE119
BTRP120
BLEU248
BVAL250

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32103017
ChainResidueDetails
APHE247
BPHE247

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|Ref.19
ChainResidueDetails
ACYS249
BCYS249

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PDB entries from 2024-07-17

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