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5MAR

Structure of human SIRT2 in complex with 1,2,4-Oxadiazole inhibitor and ADP ribose.

Functional Information from GO Data
ChainGOidnamespacecontents
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
B0017136molecular_functionNAD-dependent histone deacetylase activity
B0051287molecular_functionNAD binding
B0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS195
ACYS200
ACYS221
ACYS224

site_idAC2
Number of Residues27
Detailsbinding site for residue AR6 A 402
ChainResidue
APHE96
AARG97
ATYR104
AGLN167
AHIS187
APHE235
AGLY261
ATHR262
ASER263
AVAL266
AASN286
ALYS287
AGLU288
AGLY322
AGLU323
ACYS324
A7KE403
AEDO405
AHOH535
AHOH545
AHOH554
AHOH606
AGLY84
AALA85
AGLY86
ATHR89
AASP95

site_idAC3
Number of Residues9
Detailsbinding site for residue 7KE A 403
ChainResidue
APHE96
APHE119
ALEU134
ALEU138
AILE169
AILE232
AVAL233
AAR6402
BLEU297

site_idAC4
Number of Residues2
Detailsbinding site for residue EDO A 404
ChainResidue
ASER311
AALA314

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR89
ASER90
ALYS287
AGLU323
AAR6402

site_idAC6
Number of Residues2
Detailsbinding site for residue DMS A 406
ChainResidue
ATRP320
ALEU321

site_idAC7
Number of Residues4
Detailsbinding site for residue DMS A 407
ChainResidue
APHE96
AASN168
AILE169
AASP170

site_idAC8
Number of Residues5
Detailsbinding site for residue DMS A 408
ChainResidue
AARG77
AARG78
AGLY159
ALEU161
ALEU162

site_idAC9
Number of Residues4
Detailsbinding site for residue DMS A 409
ChainResidue
ALEU162
AARG163
AGLU181
AASP182

site_idAD1
Number of Residues3
Detailsbinding site for residue DMS A 410
ChainResidue
AARG75
ATYR104
AASP105

site_idAD2
Number of Residues9
Detailsbinding site for residue GOL A 411
ChainResidue
AGLY291
ASER293
AMET299
AMET301
AGLY302
AGLY304
AGLY305
AGLY306
AHOH559

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL A 412
ChainResidue
AARG153
AGLU348
ASER351
AHOH507
BCYS224

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS195
BCYS200
BCYS221
BCYS224

site_idAD5
Number of Residues25
Detailsbinding site for residue AR6 B 402
ChainResidue
BLYS287
BGLU288
BGLY322
BGLU323
BCYS324
B7KE403
BHOH533
BHOH547
BHOH548
BGLY84
BALA85
BGLY86
BTHR89
BASP95
BPHE96
BARG97
BTYR104
BGLN167
BHIS187
BPHE235
BGLY261
BTHR262
BSER263
BVAL266
BASN286

site_idAD6
Number of Residues8
Detailsbinding site for residue 7KE B 403
ChainResidue
BPHE96
BPHE119
BLEU134
BLEU138
BILE169
BILE232
BVAL233
BAR6402

site_idAD7
Number of Residues3
Detailsbinding site for residue ACT B 404
ChainResidue
BALA319
BTRP320
BLEU321

site_idAD8
Number of Residues4
Detailsbinding site for residue DMS B 405
ChainResidue
BPHE96
BASN168
BILE169
BASP170

site_idAD9
Number of Residues3
Detailsbinding site for residue DMS B 406
ChainResidue
BARG77
BGLY159
BLEU161

site_idAE1
Number of Residues4
Detailsbinding site for residue DMS B 407
ChainResidue
BLEU162
BARG163
BGLU181
BASP182

site_idAE2
Number of Residues4
Detailsbinding site for residue DMS B 408
ChainResidue
AHOH556
AHOH701
BTYR114
BGOL409

site_idAE3
Number of Residues2
Detailsbinding site for residue GOL B 409
ChainResidue
BGLU116
BDMS408

site_idAE4
Number of Residues9
Detailsbinding site for residue GOL B 410
ChainResidue
ASER73
AGLU74
ACYS76
AARG77
BSER122
BTYR123
BLYS126
BHOH558
BHOH598

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236
ChainResidueDetails
AHIS187
BHIS187

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:25672491, ECO:0007744|PDB:4RMG
ChainResidueDetails
AALA85
BTHR262
BASN286
BCYS324
AASP95
AGLN167
ATHR262
AASN286
ACYS324
BALA85
BASP95
BGLN167

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:11427894, ECO:0000269|PubMed:23454361, ECO:0000269|PubMed:24389023, ECO:0000269|PubMed:25672491, ECO:0000269|PubMed:25704306, ECO:0007744|PDB:4R8M
ChainResidueDetails
ACYS195
ACYS200
ACYS221
ACYS224
BCYS195
BCYS200
BCYS221
BCYS224

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q5RJQ4
ChainResidueDetails
ASER100
ASER207
BSER100
BSER207

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PDB entries from 2024-07-10

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