Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5HY8

Glycation restrains allosteric transition in hemoglobin: The molecular basis of oxidative stress under hyperglycemic conditions in diabetes

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004601	molecular_function	peroxidase activity
A	0005344	molecular_function	oxygen carrier activity
A	0005506	molecular_function	iron ion binding
A	0005515	molecular_function	protein binding
A	0005576	cellular_component	extracellular region
A	0005615	cellular_component	extracellular space
A	0005829	cellular_component	cytosol
A	0005833	cellular_component	hemoglobin complex
A	0015670	biological_process	carbon dioxide transport
A	0015671	biological_process	oxygen transport
A	0016020	cellular_component	membrane
A	0019825	molecular_function	oxygen binding
A	0020037	molecular_function	heme binding
A	0030185	biological_process	nitric oxide transport
A	0031720	molecular_function	haptoglobin binding
A	0031838	cellular_component	haptoglobin-hemoglobin complex
A	0042542	biological_process	response to hydrogen peroxide
A	0042744	biological_process	hydrogen peroxide catabolic process
A	0043177	molecular_function	organic acid binding
A	0046872	molecular_function	metal ion binding
A	0070062	cellular_component	extracellular exosome
A	0071682	cellular_component	endocytic vesicle lumen
A	0072562	cellular_component	blood microparticle
A	0098869	biological_process	cellular oxidant detoxification
B	0004601	molecular_function	peroxidase activity
B	0005344	molecular_function	oxygen carrier activity
B	0005515	molecular_function	protein binding
B	0005576	cellular_component	extracellular region
B	0005615	cellular_component	extracellular space
B	0005829	cellular_component	cytosol
B	0005833	cellular_component	hemoglobin complex
B	0008217	biological_process	regulation of blood pressure
B	0015670	biological_process	carbon dioxide transport
B	0015671	biological_process	oxygen transport
B	0019825	molecular_function	oxygen binding
B	0020037	molecular_function	heme binding
B	0030185	biological_process	nitric oxide transport
B	0030492	molecular_function	hemoglobin binding
B	0031720	molecular_function	haptoglobin binding
B	0031721	molecular_function	hemoglobin alpha binding
B	0031838	cellular_component	haptoglobin-hemoglobin complex
B	0042542	biological_process	response to hydrogen peroxide
B	0042744	biological_process	hydrogen peroxide catabolic process
B	0043177	molecular_function	organic acid binding
B	0045429	biological_process	positive regulation of nitric oxide biosynthetic process
B	0046872	molecular_function	metal ion binding
B	0070062	cellular_component	extracellular exosome
B	0070293	biological_process	renal absorption
B	0070527	biological_process	platelet aggregation
B	0071682	cellular_component	endocytic vesicle lumen
B	0072562	cellular_component	blood microparticle
B	0097746	biological_process	blood vessel diameter maintenance
B	0098869	biological_process	cellular oxidant detoxification
B	1904724	cellular_component	tertiary granule lumen
B	1904813	cellular_component	ficolin-1-rich granule lumen
C	0004601	molecular_function	peroxidase activity
C	0005344	molecular_function	oxygen carrier activity
C	0005506	molecular_function	iron ion binding
C	0005515	molecular_function	protein binding
C	0005576	cellular_component	extracellular region
C	0005615	cellular_component	extracellular space
C	0005829	cellular_component	cytosol
C	0005833	cellular_component	hemoglobin complex
C	0015670	biological_process	carbon dioxide transport
C	0015671	biological_process	oxygen transport
C	0016020	cellular_component	membrane
C	0019825	molecular_function	oxygen binding
C	0020037	molecular_function	heme binding
C	0030185	biological_process	nitric oxide transport
C	0031720	molecular_function	haptoglobin binding
C	0031838	cellular_component	haptoglobin-hemoglobin complex
C	0042542	biological_process	response to hydrogen peroxide
C	0042744	biological_process	hydrogen peroxide catabolic process
C	0043177	molecular_function	organic acid binding
C	0046872	molecular_function	metal ion binding
C	0070062	cellular_component	extracellular exosome
C	0071682	cellular_component	endocytic vesicle lumen
C	0072562	cellular_component	blood microparticle
C	0098869	biological_process	cellular oxidant detoxification
D	0004601	molecular_function	peroxidase activity
D	0005344	molecular_function	oxygen carrier activity
D	0005515	molecular_function	protein binding
D	0005576	cellular_component	extracellular region
D	0005615	cellular_component	extracellular space
D	0005829	cellular_component	cytosol
D	0005833	cellular_component	hemoglobin complex
D	0008217	biological_process	regulation of blood pressure
D	0015670	biological_process	carbon dioxide transport
D	0015671	biological_process	oxygen transport
D	0019825	molecular_function	oxygen binding
D	0020037	molecular_function	heme binding
D	0030185	biological_process	nitric oxide transport
D	0030492	molecular_function	hemoglobin binding
D	0031720	molecular_function	haptoglobin binding
D	0031721	molecular_function	hemoglobin alpha binding
D	0031838	cellular_component	haptoglobin-hemoglobin complex
D	0042542	biological_process	response to hydrogen peroxide
D	0042744	biological_process	hydrogen peroxide catabolic process
D	0043177	molecular_function	organic acid binding
D	0045429	biological_process	positive regulation of nitric oxide biosynthetic process
D	0046872	molecular_function	metal ion binding
D	0070062	cellular_component	extracellular exosome
D	0070293	biological_process	renal absorption
D	0070527	biological_process	platelet aggregation
D	0071682	cellular_component	endocytic vesicle lumen
D	0072562	cellular_component	blood microparticle
D	0097746	biological_process	blood vessel diameter maintenance
D	0098869	biological_process	cellular oxidant detoxification
D	1904724	cellular_component	tertiary granule lumen
D	1904813	cellular_component	ficolin-1-rich granule lumen
E	0004601	molecular_function	peroxidase activity
E	0005344	molecular_function	oxygen carrier activity
E	0005506	molecular_function	iron ion binding
E	0005515	molecular_function	protein binding
E	0005576	cellular_component	extracellular region
E	0005615	cellular_component	extracellular space
E	0005829	cellular_component	cytosol
E	0005833	cellular_component	hemoglobin complex
E	0015670	biological_process	carbon dioxide transport
E	0015671	biological_process	oxygen transport
E	0016020	cellular_component	membrane
E	0019825	molecular_function	oxygen binding
E	0020037	molecular_function	heme binding
E	0030185	biological_process	nitric oxide transport
E	0031720	molecular_function	haptoglobin binding
E	0031838	cellular_component	haptoglobin-hemoglobin complex
E	0042542	biological_process	response to hydrogen peroxide
E	0042744	biological_process	hydrogen peroxide catabolic process
E	0043177	molecular_function	organic acid binding
E	0046872	molecular_function	metal ion binding
E	0070062	cellular_component	extracellular exosome
E	0071682	cellular_component	endocytic vesicle lumen
E	0072562	cellular_component	blood microparticle
E	0098869	biological_process	cellular oxidant detoxification
F	0004601	molecular_function	peroxidase activity
F	0005344	molecular_function	oxygen carrier activity
F	0005515	molecular_function	protein binding
F	0005576	cellular_component	extracellular region
F	0005615	cellular_component	extracellular space
F	0005829	cellular_component	cytosol
F	0005833	cellular_component	hemoglobin complex
F	0008217	biological_process	regulation of blood pressure
F	0015670	biological_process	carbon dioxide transport
F	0015671	biological_process	oxygen transport
F	0019825	molecular_function	oxygen binding
F	0020037	molecular_function	heme binding
F	0030185	biological_process	nitric oxide transport
F	0030492	molecular_function	hemoglobin binding
F	0031720	molecular_function	haptoglobin binding
F	0031721	molecular_function	hemoglobin alpha binding
F	0031838	cellular_component	haptoglobin-hemoglobin complex
F	0042542	biological_process	response to hydrogen peroxide
F	0042744	biological_process	hydrogen peroxide catabolic process
F	0043177	molecular_function	organic acid binding
F	0045429	biological_process	positive regulation of nitric oxide biosynthetic process
F	0046872	molecular_function	metal ion binding
F	0070062	cellular_component	extracellular exosome
F	0070293	biological_process	renal absorption
F	0070527	biological_process	platelet aggregation
F	0071682	cellular_component	endocytic vesicle lumen
F	0072562	cellular_component	blood microparticle
F	0097746	biological_process	blood vessel diameter maintenance
F	0098869	biological_process	cellular oxidant detoxification
F	1904724	cellular_component	tertiary granule lumen
F	1904813	cellular_component	ficolin-1-rich granule lumen
G	0004601	molecular_function	peroxidase activity
G	0005344	molecular_function	oxygen carrier activity
G	0005506	molecular_function	iron ion binding
G	0005515	molecular_function	protein binding
G	0005576	cellular_component	extracellular region
G	0005615	cellular_component	extracellular space
G	0005829	cellular_component	cytosol
G	0005833	cellular_component	hemoglobin complex
G	0015670	biological_process	carbon dioxide transport
G	0015671	biological_process	oxygen transport
G	0016020	cellular_component	membrane
G	0019825	molecular_function	oxygen binding
G	0020037	molecular_function	heme binding
G	0030185	biological_process	nitric oxide transport
G	0031720	molecular_function	haptoglobin binding
G	0031838	cellular_component	haptoglobin-hemoglobin complex
G	0042542	biological_process	response to hydrogen peroxide
G	0042744	biological_process	hydrogen peroxide catabolic process
G	0043177	molecular_function	organic acid binding
G	0046872	molecular_function	metal ion binding
G	0070062	cellular_component	extracellular exosome
G	0071682	cellular_component	endocytic vesicle lumen
G	0072562	cellular_component	blood microparticle
G	0098869	biological_process	cellular oxidant detoxification
H	0004601	molecular_function	peroxidase activity
H	0005344	molecular_function	oxygen carrier activity
H	0005515	molecular_function	protein binding
H	0005576	cellular_component	extracellular region
H	0005615	cellular_component	extracellular space
H	0005829	cellular_component	cytosol
H	0005833	cellular_component	hemoglobin complex
H	0008217	biological_process	regulation of blood pressure
H	0015670	biological_process	carbon dioxide transport
H	0015671	biological_process	oxygen transport
H	0019825	molecular_function	oxygen binding
H	0020037	molecular_function	heme binding
H	0030185	biological_process	nitric oxide transport
H	0030492	molecular_function	hemoglobin binding
H	0031720	molecular_function	haptoglobin binding
H	0031721	molecular_function	hemoglobin alpha binding
H	0031838	cellular_component	haptoglobin-hemoglobin complex
H	0042542	biological_process	response to hydrogen peroxide
H	0042744	biological_process	hydrogen peroxide catabolic process
H	0043177	molecular_function	organic acid binding
H	0045429	biological_process	positive regulation of nitric oxide biosynthetic process
H	0046872	molecular_function	metal ion binding
H	0070062	cellular_component	extracellular exosome
H	0070293	biological_process	renal absorption
H	0070527	biological_process	platelet aggregation
H	0071682	cellular_component	endocytic vesicle lumen
H	0072562	cellular_component	blood microparticle
H	0097746	biological_process	blood vessel diameter maintenance
H	0098869	biological_process	cellular oxidant detoxification
H	1904724	cellular_component	tertiary granule lumen
H	1904813	cellular_component	ficolin-1-rich granule lumen
S	0004601	molecular_function	peroxidase activity
S	0005344	molecular_function	oxygen carrier activity
S	0005506	molecular_function	iron ion binding
S	0005515	molecular_function	protein binding
S	0005576	cellular_component	extracellular region
S	0005615	cellular_component	extracellular space
S	0005829	cellular_component	cytosol
S	0005833	cellular_component	hemoglobin complex
S	0015670	biological_process	carbon dioxide transport
S	0015671	biological_process	oxygen transport
S	0016020	cellular_component	membrane
S	0019825	molecular_function	oxygen binding
S	0020037	molecular_function	heme binding
S	0030185	biological_process	nitric oxide transport
S	0031720	molecular_function	haptoglobin binding
S	0031838	cellular_component	haptoglobin-hemoglobin complex
S	0042542	biological_process	response to hydrogen peroxide
S	0042744	biological_process	hydrogen peroxide catabolic process
S	0043177	molecular_function	organic acid binding
S	0046872	molecular_function	metal ion binding
S	0070062	cellular_component	extracellular exosome
S	0071682	cellular_component	endocytic vesicle lumen
S	0072562	cellular_component	blood microparticle
S	0098869	biological_process	cellular oxidant detoxification
T	0004601	molecular_function	peroxidase activity
T	0005344	molecular_function	oxygen carrier activity
T	0005515	molecular_function	protein binding
T	0005576	cellular_component	extracellular region
T	0005615	cellular_component	extracellular space
T	0005829	cellular_component	cytosol
T	0005833	cellular_component	hemoglobin complex
T	0008217	biological_process	regulation of blood pressure
T	0015670	biological_process	carbon dioxide transport
T	0015671	biological_process	oxygen transport
T	0019825	molecular_function	oxygen binding
T	0020037	molecular_function	heme binding
T	0030185	biological_process	nitric oxide transport
T	0030492	molecular_function	hemoglobin binding
T	0031720	molecular_function	haptoglobin binding
T	0031721	molecular_function	hemoglobin alpha binding
T	0031838	cellular_component	haptoglobin-hemoglobin complex
T	0042542	biological_process	response to hydrogen peroxide
T	0042744	biological_process	hydrogen peroxide catabolic process
T	0043177	molecular_function	organic acid binding
T	0045429	biological_process	positive regulation of nitric oxide biosynthetic process
T	0046872	molecular_function	metal ion binding
T	0070062	cellular_component	extracellular exosome
T	0070293	biological_process	renal absorption
T	0070527	biological_process	platelet aggregation
T	0071682	cellular_component	endocytic vesicle lumen
T	0072562	cellular_component	blood microparticle
T	0097746	biological_process	blood vessel diameter maintenance
T	0098869	biological_process	cellular oxidant detoxification
T	1904724	cellular_component	tertiary granule lumen
T	1904813	cellular_component	ficolin-1-rich granule lumen

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	20
Details	BINDING:

Chain	Residue	Details
D	HIS2
D	LYS82
D	HIS143
F	VAL1
F	HIS2
F	LYS82
F	HIS143
H	VAL1
H	HIS2
H	LYS82
H	HIS143
T	VAL1
T	HIS2
T	LYS82
T	HIS143
B	HIS2
B	HIS143
D	VAL1
B	VAL1
B	LYS82

site_id	SWS_FT_FI2
Number of Residues	5
Details	BINDING: distal binding residue

Chain	Residue	Details
D	HIS63
H	HIS63
T	HIS63
B	HIS63
F	HIS63

site_id	SWS_FT_FI3
Number of Residues	5
Details	BINDING: proximal binding residue

Chain	Residue	Details
B	HIS92
D	HIS92
F	HIS92
H	HIS92
T	HIS92
A	ASP47
A	SER52
A	VAL55
A	GLY59
A	LEU91
A	LEU106
A	THR108
A	VAL121
A	SER133
C	THR8
C	ALA13
C	TYR24
C	LEU29
C	HIS45
C	ASP47
C	SER52
C	VAL55
C	GLY59
C	LEU91
C	LEU106
C	THR108
C	VAL121
C	SER133
E	THR8
E	ALA13
E	TYR24
E	LEU29
E	HIS45
E	ASP47
E	SER52
E	VAL55
E	GLY59
E	LEU91
E	LEU106
E	THR108
E	VAL121
E	SER133
G	THR8
G	ALA13
G	TYR24
G	LEU29
G	HIS45
G	ASP47
G	SER52
G	VAL55
G	GLY59
G	LEU91
G	LEU106
G	THR108
G	VAL121
G	SER133
S	THR8
S	ALA13
S	TYR24
S	LEU29
S	HIS45
S	ASP47
S	SER52
S	VAL55
S	GLY59
S	LEU91
S	LEU106
S	THR108
S	VAL121
S	SER133

site_id	SWS_FT_FI4
Number of Residues	95
Details	SITE: (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269\|PubMed:12552433

Chain	Residue	Details
D	ASP52
D	GLY56
D	PHE71
D	GLY74
D	THR84
D	HIS92
D	ARG104
D	LEU110
D	GLY119
D	PHE122
D	ALA128
D	ALA140
D	LYS144
F	GLU7
F	GLY25
F	GLY29
F	TYR35
F	TRP37
F	PHE45
F	ASP52
F	GLY56
F	PHE71
F	GLY74
F	THR84
F	HIS92
F	ARG104
F	LEU110
F	GLY119
F	PHE122
F	ALA128
F	ALA140
F	LYS144
H	GLU7
H	GLY25
H	GLY29
H	TYR35
H	TRP37
H	PHE45
H	ASP52
H	GLY56
H	PHE71
H	GLY74
H	THR84
H	HIS92
H	ARG104
H	LEU110
H	GLY119
H	PHE122
H	ALA128
H	ALA140
H	LYS144
T	GLU7
T	GLY25
T	GLY29
T	TYR35
T	TRP37
T	PHE45
T	ASP52
T	GLY56
T	PHE71
T	GLY74
T	THR84
T	HIS92
T	ARG104
T	LEU110
T	GLY119
T	PHE122
T	ALA128
T	ALA140
T	LYS144
B	GLY29
B	TYR35
B	TRP37
B	PHE45
B	ASP52
B	GLY56
B	PHE71
B	GLY74
B	ARG104
B	LEU110
B	GLY119
B	PHE122
B	ALA128
B	ALA140
B	LYS144
D	GLU7
D	GLY25
D	GLY29
D	TYR35
D	TRP37
D	PHE45
B	GLU7
B	GLY25
B	THR84
B	HIS92

site_id	SWS_FT_FI5
Number of Residues	15
Details	SITE: Not glycated => ECO:0000269\|PubMed:7358733

Chain	Residue	Details
B	LYS59
B	LYS82
B	LYS95
D	LYS59
D	LYS82
D	LYS95
F	LYS59
F	LYS82
F	LYS95
H	LYS59
H	LYS82
H	LYS95
T	LYS59
T	LYS82
T	LYS95

site_id	SWS_FT_FI6
Number of Residues	5
Details	MOD_RES: N-pyruvate 2-iminyl-valine; in Hb A1b

Chain	Residue	Details
B	VAL1
D	VAL1
F	VAL1
H	VAL1
T	VAL1
C	LYS40
E	LYS7
E	LYS16
E	LYS40
G	LYS7
G	LYS16
G	LYS40
S	LYS7
S	LYS16
S	LYS40

site_id	SWS_FT_FI7
Number of Residues	10
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:24275569

Chain	Residue	Details
F	SER44
H	SER9
H	SER44
T	SER9
T	SER44
B	SER9
B	SER44
D	SER9
D	SER44
F	SER9

site_id	SWS_FT_FI8
Number of Residues	15
Details	MOD_RES: Phosphothreonine => ECO:0007744\|PubMed:24275569

Chain	Residue	Details
H	THR50
H	THR87
T	THR12
T	THR50
T	THR87
B	THR12
B	THR50
B	THR87
D	THR12
D	THR50
D	THR87
F	THR12
F	THR50
F	THR87
H	THR12

site_id	SWS_FT_FI9
Number of Residues	10
Details	MOD_RES: N6-acetyllysine => ECO:0000269\|PubMed:4531009

Chain	Residue	Details
B	LYS59
B	LYS82
D	LYS59
D	LYS82
F	LYS59
F	LYS82
H	LYS59
H	LYS82
T	LYS59
T	LYS82

site_id	SWS_FT_FI10
Number of Residues	5
Details	MOD_RES: S-nitrosocysteine => ECO:0000269\|PubMed:8637569, ECO:0000269\|PubMed:9843411

Chain	Residue	Details
G	SER138
S	SER102
S	SER124
S	SER131
S	SER138
E	SER131
E	SER138
G	SER102
G	SER124
G	SER131
B	CYS93
D	CYS93
F	CYS93
E	SER102
E	SER124
H	CYS93
T	CYS93
C	SER124
C	SER131
C	SER138

site_id	SWS_FT_FI11
Number of Residues	5
Details	MOD_RES: N6-acetyllysine; alternate => ECO:0000269\|PubMed:4531009

Chain	Residue	Details
C	THR137
E	THR108
E	THR134
E	THR137
G	THR108
G	THR134
G	THR137
S	THR108
S	THR134
S	THR137
B	LYS144
D	LYS144
F	LYS144
H	LYS144
T	LYS144

site_id	SWS_FT_FI12
Number of Residues	5
Details	CARBOHYD: N-linked (Glc) (glycation) valine; in Hb A1c => ECO:0000269\|PubMed:635569

Chain	Residue	Details
C	LYS40
E	LYS7
E	LYS16
E	LYS40
G	LYS7
G	LYS16
G	LYS40
S	LYS7
S	LYS16
S	LYS40
B	VAL1
D	VAL1
F	VAL1
H	VAL1
T	VAL1

site_id	SWS_FT_FI13
Number of Residues	20
Details	CARBOHYD: N-linked (Glc) (glycation) lysine => ECO:0000269\|PubMed:7358733

Chain	Residue	Details
D	LYS17
D	LYS66
D	LYS120
F	LYS8
F	LYS17
F	LYS66
F	LYS120
H	LYS8
H	LYS17
H	LYS66
H	LYS120
T	LYS8
T	LYS17
T	LYS66
T	LYS120
B	LYS66
B	LYS120
B	LYS8
B	LYS17
D	LYS8

site_id	SWS_FT_FI14
Number of Residues	5
Details	CARBOHYD: N-linked (Glc) (glycation) lysine; alternate => ECO:0000269\|PubMed:7358733

Chain	Residue	Details
B	LYS144
D	LYS144
F	LYS144
H	LYS144
T	LYS144

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)