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5CDR

2.65 structure of S.aureus DNA gyrase and artificially nicked DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006259biological_processDNA metabolic process
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 501
ChainResidue
ATYR322
ATHR325
AGLN328
AHOH705
AHOH809

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 502
ChainResidue
AASP61
AARG127

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 503
ChainResidue
APRO219
ATHR220
AASP96
AMET113

site_idAC4
Number of Residues6
Detailsbinding site for residue MN B 701
ChainResidue
BASP508
BASP510
BHOH818
BHOH842
BHOH848
EHOH211

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL C 501
ChainResidue
CARG47
CARG48
CGLU156
CPRO157
CHOH612
CHOH677

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL C 502
ChainResidue
AARG244
AASN319
CGLU251
CGLY255
CARG256
CHOH686
CHOH709

site_idAC7
Number of Residues6
Detailsbinding site for residue MN D 1001
ChainResidue
DASP508
DASP510
DHOH1108
DHOH1110
DHOH1116
DHOH1130

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL E 101
ChainResidue
APHE97
ASER112
AMET113
AGLN267
AVAL268
AHOH681
EDC4

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL G 2101
ChainResidue
ASER84
EDG8
FDC2013
GDG2009
GDT2010
GHOH2213

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BGLU435
BASP508
BASP510
DGLU435
DASP508
DASP510

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS460
BASN463
DLYS460
DASN463

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PDB entries from 2024-09-11

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