4ZUX

SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000786	cellular_component	nucleosome
A	0003677	molecular_function	DNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005694	cellular_component	chromosome
A	0030527	molecular_function	structural constituent of chromatin
A	0046982	molecular_function	protein heterodimerization activity
B	0000786	cellular_component	nucleosome
B	0003677	molecular_function	DNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005694	cellular_component	chromosome
B	0006334	biological_process	nucleosome assembly
B	0030527	molecular_function	structural constituent of chromatin
B	0046982	molecular_function	protein heterodimerization activity
C	0000786	cellular_component	nucleosome
C	0003677	molecular_function	DNA binding
C	0005634	cellular_component	nucleus
C	0005694	cellular_component	chromosome
C	0030527	molecular_function	structural constituent of chromatin
C	0046982	molecular_function	protein heterodimerization activity
D	0000786	cellular_component	nucleosome
D	0003677	molecular_function	DNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005694	cellular_component	chromosome
D	0030527	molecular_function	structural constituent of chromatin
D	0046982	molecular_function	protein heterodimerization activity
E	0000786	cellular_component	nucleosome
E	0003677	molecular_function	DNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005654	cellular_component	nucleoplasm
E	0005694	cellular_component	chromosome
E	0030527	molecular_function	structural constituent of chromatin
E	0046982	molecular_function	protein heterodimerization activity
F	0000786	cellular_component	nucleosome
F	0003677	molecular_function	DNA binding
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005694	cellular_component	chromosome
F	0006334	biological_process	nucleosome assembly
F	0030527	molecular_function	structural constituent of chromatin
F	0046982	molecular_function	protein heterodimerization activity
G	0000786	cellular_component	nucleosome
G	0003677	molecular_function	DNA binding
G	0005634	cellular_component	nucleus
G	0005694	cellular_component	chromosome
G	0030527	molecular_function	structural constituent of chromatin
G	0046982	molecular_function	protein heterodimerization activity
H	0000786	cellular_component	nucleosome
H	0003677	molecular_function	DNA binding
H	0005515	molecular_function	protein binding
H	0005634	cellular_component	nucleus
H	0005694	cellular_component	chromosome
H	0030527	molecular_function	structural constituent of chromatin
H	0046982	molecular_function	protein heterodimerization activity
K	0000786	cellular_component	nucleosome
K	0003677	molecular_function	DNA binding
K	0005515	molecular_function	protein binding
K	0005634	cellular_component	nucleus
K	0005654	cellular_component	nucleoplasm
K	0005694	cellular_component	chromosome
K	0030527	molecular_function	structural constituent of chromatin
K	0046982	molecular_function	protein heterodimerization activity
L	0000786	cellular_component	nucleosome
L	0003677	molecular_function	DNA binding
L	0005515	molecular_function	protein binding
L	0005634	cellular_component	nucleus
L	0005694	cellular_component	chromosome
L	0006334	biological_process	nucleosome assembly
L	0030527	molecular_function	structural constituent of chromatin
L	0046982	molecular_function	protein heterodimerization activity
M	0000786	cellular_component	nucleosome
M	0003677	molecular_function	DNA binding
M	0005634	cellular_component	nucleus
M	0005694	cellular_component	chromosome
M	0030527	molecular_function	structural constituent of chromatin
M	0046982	molecular_function	protein heterodimerization activity
N	0000786	cellular_component	nucleosome
N	0003677	molecular_function	DNA binding
N	0005515	molecular_function	protein binding
N	0005634	cellular_component	nucleus
N	0005694	cellular_component	chromosome
N	0030527	molecular_function	structural constituent of chromatin
N	0046982	molecular_function	protein heterodimerization activity
O	0000786	cellular_component	nucleosome
O	0003677	molecular_function	DNA binding
O	0005515	molecular_function	protein binding
O	0005634	cellular_component	nucleus
O	0005654	cellular_component	nucleoplasm
O	0005694	cellular_component	chromosome
O	0030527	molecular_function	structural constituent of chromatin
O	0046982	molecular_function	protein heterodimerization activity
P	0000786	cellular_component	nucleosome
P	0003677	molecular_function	DNA binding
P	0005515	molecular_function	protein binding
P	0005634	cellular_component	nucleus
P	0005694	cellular_component	chromosome
P	0006334	biological_process	nucleosome assembly
P	0030527	molecular_function	structural constituent of chromatin
P	0046982	molecular_function	protein heterodimerization activity
Q	0000786	cellular_component	nucleosome
Q	0003677	molecular_function	DNA binding
Q	0005634	cellular_component	nucleus
Q	0005694	cellular_component	chromosome
Q	0030527	molecular_function	structural constituent of chromatin
Q	0046982	molecular_function	protein heterodimerization activity
R	0000786	cellular_component	nucleosome
R	0003677	molecular_function	DNA binding
R	0005515	molecular_function	protein binding
R	0005634	cellular_component	nucleus
R	0005694	cellular_component	chromosome
R	0030527	molecular_function	structural constituent of chromatin
R	0046982	molecular_function	protein heterodimerization activity
U	0000124	cellular_component	SAGA complex
U	0004843	molecular_function	cysteine-type deubiquitinase activity
U	0005515	molecular_function	protein binding
U	0005634	cellular_component	nucleus
U	0006357	biological_process	regulation of transcription by RNA polymerase II
U	0006508	biological_process	proteolysis
U	0008233	molecular_function	peptidase activity
U	0008234	molecular_function	cysteine-type peptidase activity
U	0008270	molecular_function	zinc ion binding
U	0008380	biological_process	RNA splicing
U	0016579	biological_process	protein deubiquitination
U	0016787	molecular_function	hydrolase activity
U	0046695	cellular_component	SLIK (SAGA-like) complex
U	0046872	molecular_function	metal ion binding
U	0060090	molecular_function	molecular adaptor activity
U	0071819	cellular_component	DUBm complex
V	0000124	cellular_component	SAGA complex
V	0000932	cellular_component	P-body
V	0000973	biological_process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
V	0003682	molecular_function	chromatin binding
V	0003713	molecular_function	transcription coactivator activity
V	0005515	molecular_function	protein binding
V	0005634	cellular_component	nucleus
V	0005643	cellular_component	nuclear pore
V	0005654	cellular_component	nucleoplasm
V	0005737	cellular_component	cytoplasm
V	0006325	biological_process	chromatin organization
V	0006357	biological_process	regulation of transcription by RNA polymerase II
V	0006368	biological_process	transcription elongation by RNA polymerase II
V	0006406	biological_process	mRNA export from nucleus
V	0008047	molecular_function	enzyme activator activity
V	0015031	biological_process	protein transport
V	0016973	biological_process	poly(A)+ mRNA export from nucleus
V	0032880	biological_process	regulation of protein localization
V	0043229	cellular_component	intracellular organelle
V	0045893	biological_process	positive regulation of DNA-templated transcription
V	0045944	biological_process	positive regulation of transcription by RNA polymerase II
V	0046695	cellular_component	SLIK (SAGA-like) complex
V	0051028	biological_process	mRNA transport
V	0070390	cellular_component	transcription export complex 2
V	0071028	biological_process	nuclear mRNA surveillance
V	0071819	cellular_component	DUBm complex
W	0000124	cellular_component	SAGA complex
W	0003713	molecular_function	transcription coactivator activity
W	0005515	molecular_function	protein binding
W	0005634	cellular_component	nucleus
W	0006325	biological_process	chromatin organization
W	0006357	biological_process	regulation of transcription by RNA polymerase II
W	0008047	molecular_function	enzyme activator activity
W	0008270	molecular_function	zinc ion binding
W	0045893	biological_process	positive regulation of DNA-templated transcription
W	0046695	cellular_component	SLIK (SAGA-like) complex
W	0046872	molecular_function	metal ion binding
W	0070461	cellular_component	SAGA-type complex
W	0071819	cellular_component	DUBm complex
Z	0000124	cellular_component	SAGA complex
Z	0004843	molecular_function	cysteine-type deubiquitinase activity
Z	0005515	molecular_function	protein binding
Z	0005634	cellular_component	nucleus
Z	0006357	biological_process	regulation of transcription by RNA polymerase II
Z	0006508	biological_process	proteolysis
Z	0008233	molecular_function	peptidase activity
Z	0008234	molecular_function	cysteine-type peptidase activity
Z	0008270	molecular_function	zinc ion binding
Z	0008380	biological_process	RNA splicing
Z	0016579	biological_process	protein deubiquitination
Z	0016787	molecular_function	hydrolase activity
Z	0046695	cellular_component	SLIK (SAGA-like) complex
Z	0046872	molecular_function	metal ion binding
Z	0060090	molecular_function	molecular adaptor activity
Z	0071819	cellular_component	DUBm complex
a	0000124	cellular_component	SAGA complex
a	0000932	cellular_component	P-body
a	0000973	biological_process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
a	0003682	molecular_function	chromatin binding
a	0003713	molecular_function	transcription coactivator activity
a	0005515	molecular_function	protein binding
a	0005634	cellular_component	nucleus
a	0005643	cellular_component	nuclear pore
a	0005654	cellular_component	nucleoplasm
a	0005737	cellular_component	cytoplasm
a	0006325	biological_process	chromatin organization
a	0006357	biological_process	regulation of transcription by RNA polymerase II
a	0006368	biological_process	transcription elongation by RNA polymerase II
a	0006406	biological_process	mRNA export from nucleus
a	0008047	molecular_function	enzyme activator activity
a	0015031	biological_process	protein transport
a	0016973	biological_process	poly(A)+ mRNA export from nucleus
a	0032880	biological_process	regulation of protein localization
a	0043229	cellular_component	intracellular organelle
a	0045893	biological_process	positive regulation of DNA-templated transcription
a	0045944	biological_process	positive regulation of transcription by RNA polymerase II
a	0046695	cellular_component	SLIK (SAGA-like) complex
a	0051028	biological_process	mRNA transport
a	0070390	cellular_component	transcription export complex 2
a	0071028	biological_process	nuclear mRNA surveillance
a	0071819	cellular_component	DUBm complex
b	0000124	cellular_component	SAGA complex
b	0003713	molecular_function	transcription coactivator activity
b	0005515	molecular_function	protein binding
b	0005634	cellular_component	nucleus
b	0006325	biological_process	chromatin organization
b	0006357	biological_process	regulation of transcription by RNA polymerase II
b	0008047	molecular_function	enzyme activator activity
b	0008270	molecular_function	zinc ion binding
b	0045893	biological_process	positive regulation of DNA-templated transcription
b	0046695	cellular_component	SLIK (SAGA-like) complex
b	0046872	molecular_function	metal ion binding
b	0070461	cellular_component	SAGA-type complex
b	0071819	cellular_component	DUBm complex
e	0000124	cellular_component	SAGA complex
e	0004843	molecular_function	cysteine-type deubiquitinase activity
e	0005515	molecular_function	protein binding
e	0005634	cellular_component	nucleus
e	0006357	biological_process	regulation of transcription by RNA polymerase II
e	0006508	biological_process	proteolysis
e	0008233	molecular_function	peptidase activity
e	0008234	molecular_function	cysteine-type peptidase activity
e	0008270	molecular_function	zinc ion binding
e	0008380	biological_process	RNA splicing
e	0016579	biological_process	protein deubiquitination
e	0016787	molecular_function	hydrolase activity
e	0046695	cellular_component	SLIK (SAGA-like) complex
e	0046872	molecular_function	metal ion binding
e	0060090	molecular_function	molecular adaptor activity
e	0071819	cellular_component	DUBm complex
f	0000124	cellular_component	SAGA complex
f	0000932	cellular_component	P-body
f	0000973	biological_process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
f	0003682	molecular_function	chromatin binding
f	0003713	molecular_function	transcription coactivator activity
f	0005515	molecular_function	protein binding
f	0005634	cellular_component	nucleus
f	0005643	cellular_component	nuclear pore
f	0005654	cellular_component	nucleoplasm
f	0005737	cellular_component	cytoplasm
f	0006325	biological_process	chromatin organization
f	0006357	biological_process	regulation of transcription by RNA polymerase II
f	0006368	biological_process	transcription elongation by RNA polymerase II
f	0006406	biological_process	mRNA export from nucleus
f	0008047	molecular_function	enzyme activator activity
f	0015031	biological_process	protein transport
f	0016973	biological_process	poly(A)+ mRNA export from nucleus
f	0032880	biological_process	regulation of protein localization
f	0043229	cellular_component	intracellular organelle
f	0045893	biological_process	positive regulation of DNA-templated transcription
f	0045944	biological_process	positive regulation of transcription by RNA polymerase II
f	0046695	cellular_component	SLIK (SAGA-like) complex
f	0051028	biological_process	mRNA transport
f	0070390	cellular_component	transcription export complex 2
f	0071028	biological_process	nuclear mRNA surveillance
f	0071819	cellular_component	DUBm complex
g	0000124	cellular_component	SAGA complex
g	0003713	molecular_function	transcription coactivator activity
g	0005515	molecular_function	protein binding
g	0005634	cellular_component	nucleus
g	0006325	biological_process	chromatin organization
g	0006357	biological_process	regulation of transcription by RNA polymerase II
g	0008047	molecular_function	enzyme activator activity
g	0008270	molecular_function	zinc ion binding
g	0045893	biological_process	positive regulation of DNA-templated transcription
g	0046695	cellular_component	SLIK (SAGA-like) complex
g	0046872	molecular_function	metal ion binding
g	0070461	cellular_component	SAGA-type complex
g	0071819	cellular_component	DUBm complex
j	0000124	cellular_component	SAGA complex
j	0004843	molecular_function	cysteine-type deubiquitinase activity
j	0005515	molecular_function	protein binding
j	0005634	cellular_component	nucleus
j	0006357	biological_process	regulation of transcription by RNA polymerase II
j	0006508	biological_process	proteolysis
j	0008233	molecular_function	peptidase activity
j	0008234	molecular_function	cysteine-type peptidase activity
j	0008270	molecular_function	zinc ion binding
j	0008380	biological_process	RNA splicing
j	0016579	biological_process	protein deubiquitination
j	0016787	molecular_function	hydrolase activity
j	0046695	cellular_component	SLIK (SAGA-like) complex
j	0046872	molecular_function	metal ion binding
j	0060090	molecular_function	molecular adaptor activity
j	0071819	cellular_component	DUBm complex
k	0000124	cellular_component	SAGA complex
k	0000932	cellular_component	P-body
k	0000973	biological_process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
k	0003682	molecular_function	chromatin binding
k	0003713	molecular_function	transcription coactivator activity
k	0005515	molecular_function	protein binding
k	0005634	cellular_component	nucleus
k	0005643	cellular_component	nuclear pore
k	0005654	cellular_component	nucleoplasm
k	0005737	cellular_component	cytoplasm
k	0006325	biological_process	chromatin organization
k	0006357	biological_process	regulation of transcription by RNA polymerase II
k	0006368	biological_process	transcription elongation by RNA polymerase II
k	0006406	biological_process	mRNA export from nucleus
k	0008047	molecular_function	enzyme activator activity
k	0015031	biological_process	protein transport
k	0016973	biological_process	poly(A)+ mRNA export from nucleus
k	0032880	biological_process	regulation of protein localization
k	0043229	cellular_component	intracellular organelle
k	0045893	biological_process	positive regulation of DNA-templated transcription
k	0045944	biological_process	positive regulation of transcription by RNA polymerase II
k	0046695	cellular_component	SLIK (SAGA-like) complex
k	0051028	biological_process	mRNA transport
k	0070390	cellular_component	transcription export complex 2
k	0071028	biological_process	nuclear mRNA surveillance
k	0071819	cellular_component	DUBm complex
l	0000124	cellular_component	SAGA complex
l	0003713	molecular_function	transcription coactivator activity
l	0005515	molecular_function	protein binding
l	0005634	cellular_component	nucleus
l	0006325	biological_process	chromatin organization
l	0006357	biological_process	regulation of transcription by RNA polymerase II
l	0008047	molecular_function	enzyme activator activity
l	0008270	molecular_function	zinc ion binding
l	0045893	biological_process	positive regulation of DNA-templated transcription
l	0046695	cellular_component	SLIK (SAGA-like) complex
l	0046872	molecular_function	metal ion binding
l	0070461	cellular_component	SAGA-type complex
l	0071819	cellular_component	DUBm complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN U 501

Chain	Residue
U	CYS46
U	CYS49
U	CYS68
U	HIS73

---

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN U 502

Chain	Residue
U	CYS60
U	CYS63
U	HIS77
U	HIS83

---

site_id	AC3
Number of Residues	4
Details	binding site for residue ZN U 503

Chain	Residue
U	HIS6
U	CYS96
U	CYS99
U	CYS4

---

site_id	AC4
Number of Residues	4
Details	binding site for residue ZN U 504

Chain	Residue
U	HIS170
U	CYS174
U	CYS182
U	CYS185

---

site_id	AC5
Number of Residues	4
Details	binding site for residue ZN U 505

Chain	Residue
U	HIS250
U	CYS271
U	CYS273
U	HIS276

---

site_id	AC6
Number of Residues	4
Details	binding site for residue ZN U 506

Chain	Residue
U	CYS289
U	CYS292
U	CYS336
U	CYS339

---

site_id	AC7
Number of Residues	4
Details	binding site for residue ZN W 101

Chain	Residue
W	CYS73
W	ASN75
W	CYS76
W	CYS92

---

site_id	AC8
Number of Residues	4
Details	binding site for residue ZN Y 201

Chain	Residue
Y	CYS78
Y	CYS81
Y	HIS93
Y	CYS98

---

site_id	AC9
Number of Residues	4
Details	binding site for residue ZN Z 501

Chain	Residue
Z	CYS289
Z	GLY291
Z	CYS292
Z	CYS339

---

site_id	AD1
Number of Residues	4
Details	binding site for residue ZN Z 502

Chain	Residue
Z	CYS271
Z	GLU272
Z	CYS273
Z	HIS276

---

site_id	AD2
Number of Residues	4
Details	binding site for residue ZN Z 503

Chain	Residue
Z	HIS170
Z	CYS174
Z	CYS182
Z	CYS185

---

site_id	AD3
Number of Residues	4
Details	binding site for residue ZN Z 504

Chain	Residue
Z	CYS4
Z	HIS6
Z	CYS96
Z	CYS99

---

site_id	AD4
Number of Residues	4
Details	binding site for residue ZN Z 505

Chain	Residue
Z	CYS60
Z	CYS63
Z	HIS77
Z	HIS83

---

site_id	AD5
Number of Residues	5
Details	binding site for residue ZN Z 506

Chain	Residue
Z	CYS46
Z	CYS49
Z	CYS68
Z	HIS71
Z	HIS73

---

site_id	AD6
Number of Residues	5
Details	binding site for residue ZN b 101

Chain	Residue
b	CYS73
b	ASN75
b	CYS76
b	HIS88
b	CYS92

---

site_id	AD7
Number of Residues	4
Details	binding site for residue ZN d 201

Chain	Residue
d	CYS78
d	CYS81
d	HIS93
d	CYS98

---

site_id	AD8
Number of Residues	4
Details	binding site for residue ZN e 501

Chain	Residue
e	CYS46
e	CYS49
e	CYS68
e	HIS73

---

site_id	AD9
Number of Residues	4
Details	binding site for residue ZN e 502

Chain	Residue
e	CYS60
e	CYS63
e	HIS77
e	HIS83

---

site_id	AE1
Number of Residues	4
Details	binding site for residue ZN e 503

Chain	Residue
e	CYS4
e	HIS6
e	CYS96
e	CYS99

---

site_id	AE2
Number of Residues	4
Details	binding site for residue ZN e 504

Chain	Residue
e	HIS170
e	CYS174
e	CYS182
e	CYS185

---

site_id	AE3
Number of Residues	4
Details	binding site for residue ZN e 505

Chain	Residue
e	HIS250
e	CYS271
e	CYS273
e	HIS276

---

site_id	AE4
Number of Residues	6
Details	binding site for residue ZN e 506

Chain	Residue
e	CYS289
e	GLY291
e	CYS292
e	ASN295
e	CYS336
e	CYS339

---

site_id	AE5
Number of Residues	4
Details	binding site for residue ZN g 101

Chain	Residue
g	CYS73
g	CYS76
g	HIS88
g	CYS92

---

site_id	AE6
Number of Residues	4
Details	binding site for residue ZN i 201

Chain	Residue
i	CYS98
i	CYS78
i	CYS81
i	HIS93

---

site_id	AE7
Number of Residues	4
Details	binding site for residue ZN j 501

Chain	Residue
j	CYS289
j	CYS292
j	CYS336
j	CYS339

---

site_id	AE8
Number of Residues	4
Details	binding site for residue ZN j 502

Chain	Residue
j	HIS250
j	CYS271
j	CYS273
j	HIS276

---

site_id	AE9
Number of Residues	4
Details	binding site for residue ZN j 503

Chain	Residue
j	HIS170
j	CYS174
j	CYS182
j	CYS185

---

site_id	AF1
Number of Residues	4
Details	binding site for residue ZN j 504

Chain	Residue
j	CYS4
j	HIS6
j	PHE85
j	CYS96

---

site_id	AF2
Number of Residues	4
Details	binding site for residue ZN j 505

Chain	Residue
j	CYS60
j	CYS63
j	HIS77
j	HIS83

---

site_id	AF3
Number of Residues	4
Details	binding site for residue ZN j 506

Chain	Residue
j	CYS46
j	CYS49
j	CYS68
j	HIS73

---

site_id	AF4
Number of Residues	5
Details	binding site for residue ZN l 101

Chain	Residue
l	CYS73
l	ASN75
l	CYS76
l	HIS88
l	CYS92

---

site_id	AF5
Number of Residues	4
Details	binding site for residue ZN n 201

Chain	Residue
n	CYS78
n	CYS81
n	HIS93
n	CYS98

---

Functional Information from PROSITE/UniProt

site_id	PS00047
Number of Residues	5
Details	HISTONE_H4 Histone H4 signature. GAKRH

Chain	Residue	Details
B	GLY14-HIS18

---

site_id	PS00357
Number of Residues	23
Details	HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG

Chain	Residue	Details
D	ARG89-GLY111

---

site_id	PS00299
Number of Residues	26
Details	UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD

Chain	Residue	Details
c	LYS27-ASP52

---

site_id	PS00973
Number of Residues	18
Details	USP_2 Ubiquitin specific protease (USP) domain signature 2. YeLiGIvsHkGtvne..GHY

Chain	Residue	Details
e	TYR411-TYR428

---

site_id	PS00046
Number of Residues	7
Details	HISTONE_H2A Histone H2A signature. AGLqFPV

Chain	Residue	Details
C	ALA21-VAL27

---

site_id	PS00322
Number of Residues	7
Details	HISTONE_H3_1 Histone H3 signature 1. KAPRKQL

Chain	Residue	Details
A	LYS14-LEU20

---

site_id	PS00959
Number of Residues	9
Details	HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI

Chain	Residue	Details
A	PRO66-ILE74

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	SITE: Interacts with activating enzyme

Chain	Residue	Details
X	ARG54
N	LYS9
N	LYS12
N	LYS17
R	LYS2
R	LYS9
R	LYS12
R	LYS17
X	ARG72
c	ARG54
c	ARG72
h	ARG54
h	ARG72
m	ARG54
m	ARG72
N	LYS2

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	SITE: Essential for function

Chain	Residue	Details
X	HIS68
c	HIS68
h	HIS68
m	HIS68

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	MOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291

Chain	Residue	Details
X	SER65
c	SER65
h	SER65
m	SER65
M	LYS9
M	LYS95
Q	LYS9
Q	LYS95

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	MOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457

Chain	Residue	Details
X	THR66
Z	CYS49
Z	CYS60
Z	CYS63
Z	CYS68
Z	HIS73
Z	HIS77
Z	HIS83
e	CYS46
e	CYS49
e	CYS60
c	THR66
e	CYS63
e	CYS68
e	HIS73
e	HIS77
e	HIS83
j	CYS46
j	CYS49
j	CYS60
j	CYS63
j	CYS68
h	THR66
j	HIS73
j	HIS77
j	HIS83
m	THR66
U	CYS68
U	HIS73
U	HIS77
U	HIS83
Z	CYS46

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	MOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742

Chain	Residue	Details
X	GLY76
L	LYS16
L	LYS44
L	LYS79
P	LYS8
P	LYS16
P	LYS44
P	LYS79
c	GLY76
h	GLY76
m	GLY76
M	LYS74
M	LYS75
Q	LYS74
Q	LYS75
L	LYS8

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603

Chain	Residue	Details
X	LYS6
c	LYS6
h	LYS6
m	LYS6
L	LYS12
L	LYS20
P	LYS12
P	LYS20

---

site_id	SWS_FT_FI7
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)

Chain	Residue	Details
C	LYS118
X	GLY76
M	LYS118
c	GLY76
L	LYS31
h	GLY76
P	LYS31
m	GLY76

---

site_id	SWS_FT_FI8
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144

Chain	Residue	Details
X	LYS11
M	LYS15
M	LYS119
Q	LYS13
Q	LYS15
Q	LYS119
X	LYS48
c	LYS11
c	LYS48
h	LYS11
h	LYS48
m	LYS11
m	LYS48
M	LYS13

---

site_id	SWS_FT_FI9
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860

Chain	Residue	Details
X	LYS27
c	LYS27
h	LYS27
m	LYS27
L	TYR51
L	TYR88
P	TYR51
P	TYR88

---

site_id	SWS_FT_FI10
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127

Chain	Residue	Details
X	LYS29
E	LYS64
K	LYS18
K	LYS23
K	LYS27
K	LYS36
K	LYS64
O	LYS18
O	LYS23
O	LYS27
O	LYS36
c	LYS29
O	LYS64
h	LYS29
m	LYS29
A	LYS64
E	LYS18
E	LYS23
E	LYS27
E	LYS36

---

site_id	SWS_FT_FI11
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577

Chain	Residue	Details
X	LYS33
c	LYS33
h	LYS33
m	LYS33

---

site_id	SWS_FT_FI12
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106

Chain	Residue	Details
X	LYS63
c	LYS63
h	LYS63
m	LYS63

---

site_id	SWS_FT_FI13
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805

Chain	Residue	Details
A	LYS37
B	LYS91
K	LYS37
F	LYS91
L	LYS91
P	LYS91

---

site_id	SWS_FT_FI14
Number of Residues	4
Details	MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	TYR41
E	TYR41
K	TYR41
O	TYR41

---

site_id	SWS_FT_FI15
Number of Residues	8
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228

Chain	Residue	Details
A	LYS56
A	LYS79
E	LYS56
E	LYS79
K	LYS56
K	LYS79
O	LYS56
O	LYS79

---

site_id	SWS_FT_FI16
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	SER57
E	SER57
K	SER57
O	SER57

---

site_id	SWS_FT_FI17
Number of Residues	8
Details	MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	THR80
A	THR107
E	THR80
E	THR107
K	THR80
K	THR107
O	THR80
O	THR107

---

site_id	SWS_FT_FI18
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243

Chain	Residue	Details
A	SER86
E	SER86
K	SER86
O	SER86

---

site_id	SWS_FT_FI19
Number of Residues	4
Details	MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	LYS115
E	LYS115
K	LYS115
O	LYS115

---

site_id	SWS_FT_FI20
Number of Residues	4
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	LYS122
E	LYS122
K	LYS122
O	LYS122

---

site_id	SWS_FT_FI21
Number of Residues	4
Details	LIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3

Chain	Residue	Details
A	CYS110
E	CYS110
K	CYS110
O	CYS110

---