4OYT
Crystal structure of ternary complex of Plasmodium vivax SHMT with D-serine and folinic acid
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004372 | molecular_function | glycine hydroxymethyltransferase activity |
A | 0006730 | biological_process | one-carbon metabolic process |
A | 0016740 | molecular_function | transferase activity |
A | 0019264 | biological_process | glycine biosynthetic process from serine |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0035999 | biological_process | tetrahydrofolate interconversion |
B | 0004372 | molecular_function | glycine hydroxymethyltransferase activity |
B | 0006730 | biological_process | one-carbon metabolic process |
B | 0016740 | molecular_function | transferase activity |
B | 0019264 | biological_process | glycine biosynthetic process from serine |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0035999 | biological_process | tetrahydrofolate interconversion |
C | 0004372 | molecular_function | glycine hydroxymethyltransferase activity |
C | 0006730 | biological_process | one-carbon metabolic process |
C | 0016740 | molecular_function | transferase activity |
C | 0019264 | biological_process | glycine biosynthetic process from serine |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0035999 | biological_process | tetrahydrofolate interconversion |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | binding site for residue 1W9 A 501 |
Chain | Residue |
A | SER34 |
A | HIS236 |
A | LYS237 |
A | ARG371 |
A | FON502 |
A | HOH664 |
B | TYR54 |
B | GLU56 |
B | TYR64 |
B | GLY272 |
B | HOH613 |
A | SER100 |
A | GLY101 |
A | SER102 |
A | HIS129 |
A | THR183 |
A | ASP208 |
A | HIS211 |
A | THR234 |
site_id | AC2 |
Number of Residues | 14 |
Details | binding site for residue FON A 502 |
Chain | Residue |
A | LEU124 |
A | GLY127 |
A | GLY128 |
A | HIS129 |
A | LEU130 |
A | VAL141 |
A | THR183 |
A | CYS364 |
A | 1W9501 |
A | GOL504 |
A | HOH667 |
B | GLU56 |
B | TYR63 |
B | TYR64 |
site_id | AC3 |
Number of Residues | 10 |
Details | binding site for residue GOL A 503 |
Chain | Residue |
A | SER126 |
A | GLY159 |
A | SER184 |
A | TYR185 |
A | VAL319 |
A | VAL329 |
A | THR357 |
A | ILE358 |
A | HOH613 |
A | HOH645 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue GOL A 504 |
Chain | Residue |
A | LYS355 |
A | ASN356 |
A | THR357 |
A | CYS364 |
A | FON502 |
A | HOH666 |
A | HOH667 |
site_id | AC5 |
Number of Residues | 20 |
Details | binding site for residue 1W9 B 501 |
Chain | Residue |
A | TYR54 |
A | GLU56 |
A | TYR64 |
A | GLY272 |
A | HOH637 |
B | SER34 |
B | SER100 |
B | GLY101 |
B | SER102 |
B | HIS129 |
B | THR183 |
B | ASP208 |
B | HIS211 |
B | THR234 |
B | HIS236 |
B | LYS237 |
B | ARG371 |
B | FON502 |
B | HOH615 |
B | HOH620 |
site_id | AC6 |
Number of Residues | 10 |
Details | binding site for residue FON B 502 |
Chain | Residue |
A | GLU56 |
A | TYR63 |
A | TYR64 |
B | LEU124 |
B | GLY127 |
B | GLY128 |
B | HIS129 |
B | LEU130 |
B | THR183 |
B | 1W9501 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residue GOL B 503 |
Chain | Residue |
A | ALA103 |
A | HOH682 |
B | LEU99 |
B | ALA103 |
B | GLN107 |
B | PHE269 |
B | GLN270 |
B | HOH666 |
site_id | AC8 |
Number of Residues | 20 |
Details | binding site for residue 1W9 C 501 |
Chain | Residue |
C | THR234 |
C | HIS236 |
C | LYS237 |
C | GLY272 |
C | ARG371 |
C | FON502 |
C | HOH604 |
C | HOH620 |
C | HOH621 |
C | SER34 |
C | TYR54 |
C | GLU56 |
C | TYR64 |
C | SER100 |
C | GLY101 |
C | SER102 |
C | HIS129 |
C | THR183 |
C | ASP208 |
C | HIS211 |
site_id | AC9 |
Number of Residues | 10 |
Details | binding site for residue FON C 502 |
Chain | Residue |
C | GLU56 |
C | TYR63 |
C | TYR64 |
C | LEU124 |
C | GLY127 |
C | GLY128 |
C | HIS129 |
C | LEU130 |
C | THR183 |
C | 1W9501 |
site_id | AD1 |
Number of Residues | 13 |
Details | binding site for residue TRS C 503 |
Chain | Residue |
C | CYS125 |
C | SER126 |
C | GLY127 |
C | CYS155 |
C | GLY159 |
C | SER184 |
C | PRO186 |
C | VAL319 |
C | VAL329 |
C | ASN356 |
C | THR357 |
C | ILE358 |
C | HOH643 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue ETF C 504 |
Chain | Residue |
C | GLN78 |
C | GLY93 |
C | VAL94 |
C | GLU258 |
C | ASN262 |
C | HOH661 |