Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4EDZ

Crystal structure of hH-PGDS with water displacing inhibitor

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0001516	biological_process	prostaglandin biosynthetic process
A	0004364	molecular_function	glutathione transferase activity
A	0004667	molecular_function	prostaglandin-D synthase activity
A	0005509	molecular_function	calcium ion binding
A	0005515	molecular_function	protein binding
A	0005654	cellular_component	nucleoplasm
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006629	biological_process	lipid metabolic process
A	0006631	biological_process	fatty acid metabolic process
A	0006633	biological_process	fatty acid biosynthetic process
A	0006693	biological_process	prostaglandin metabolic process
A	0006749	biological_process	glutathione metabolic process
A	0007165	biological_process	signal transduction
A	0007626	biological_process	locomotory behavior
A	0009624	biological_process	response to nematode
A	0010269	biological_process	response to selenium ion
A	0016740	molecular_function	transferase activity
A	0016853	molecular_function	isomerase activity
A	0042803	molecular_function	protein homodimerization activity
A	0046872	molecular_function	metal ion binding
A	2000255	biological_process	negative regulation of male germ cell proliferation
B	0000287	molecular_function	magnesium ion binding
B	0001516	biological_process	prostaglandin biosynthetic process
B	0004364	molecular_function	glutathione transferase activity
B	0004667	molecular_function	prostaglandin-D synthase activity
B	0005509	molecular_function	calcium ion binding
B	0005515	molecular_function	protein binding
B	0005654	cellular_component	nucleoplasm
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006629	biological_process	lipid metabolic process
B	0006631	biological_process	fatty acid metabolic process
B	0006633	biological_process	fatty acid biosynthetic process
B	0006693	biological_process	prostaglandin metabolic process
B	0006749	biological_process	glutathione metabolic process
B	0007165	biological_process	signal transduction
B	0007626	biological_process	locomotory behavior
B	0009624	biological_process	response to nematode
B	0010269	biological_process	response to selenium ion
B	0016740	molecular_function	transferase activity
B	0016853	molecular_function	isomerase activity
B	0042803	molecular_function	protein homodimerization activity
B	0046872	molecular_function	metal ion binding
B	2000255	biological_process	negative regulation of male germ cell proliferation
C	0000287	molecular_function	magnesium ion binding
C	0001516	biological_process	prostaglandin biosynthetic process
C	0004364	molecular_function	glutathione transferase activity
C	0004667	molecular_function	prostaglandin-D synthase activity
C	0005509	molecular_function	calcium ion binding
C	0005515	molecular_function	protein binding
C	0005654	cellular_component	nucleoplasm
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006629	biological_process	lipid metabolic process
C	0006631	biological_process	fatty acid metabolic process
C	0006633	biological_process	fatty acid biosynthetic process
C	0006693	biological_process	prostaglandin metabolic process
C	0006749	biological_process	glutathione metabolic process
C	0007165	biological_process	signal transduction
C	0007626	biological_process	locomotory behavior
C	0009624	biological_process	response to nematode
C	0010269	biological_process	response to selenium ion
C	0016740	molecular_function	transferase activity
C	0016853	molecular_function	isomerase activity
C	0042803	molecular_function	protein homodimerization activity
C	0046872	molecular_function	metal ion binding
C	2000255	biological_process	negative regulation of male germ cell proliferation
D	0000287	molecular_function	magnesium ion binding
D	0001516	biological_process	prostaglandin biosynthetic process
D	0004364	molecular_function	glutathione transferase activity
D	0004667	molecular_function	prostaglandin-D synthase activity
D	0005509	molecular_function	calcium ion binding
D	0005515	molecular_function	protein binding
D	0005654	cellular_component	nucleoplasm
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006629	biological_process	lipid metabolic process
D	0006631	biological_process	fatty acid metabolic process
D	0006633	biological_process	fatty acid biosynthetic process
D	0006693	biological_process	prostaglandin metabolic process
D	0006749	biological_process	glutathione metabolic process
D	0007165	biological_process	signal transduction
D	0007626	biological_process	locomotory behavior
D	0009624	biological_process	response to nematode
D	0010269	biological_process	response to selenium ion
D	0016740	molecular_function	transferase activity
D	0016853	molecular_function	isomerase activity
D	0042803	molecular_function	protein homodimerization activity
D	0046872	molecular_function	metal ion binding
D	2000255	biological_process	negative regulation of male germ cell proliferation

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	BINDING SITE FOR RESIDUE GSH A 201

Chain	Residue
A	TYR8
A	HOH303
A	HOH304
A	HOH321
A	HOH360
A	HOH405
A	HOH414
B	ASP97
A	ARG14
A	TRP39
A	LYS43
A	LYS50
A	ILE51
A	PRO52
A	GLN63
A	SER64

site_id	AC2
Number of Residues	12
Details	BINDING SITE FOR RESIDUE 0O5 A 202

Chain	Residue
A	MET11
A	GLY13
A	ARG14
A	GLN36
A	ASP96
A	MET99
A	TRP104
A	TYR152
A	ILE155
A	LEU199
A	HOH319
A	HOH378

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG B 201

Chain	Residue
A	HOH301
A	HOH302
B	HOH301
B	HOH302

site_id	AC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GSH B 202

Chain	Residue
A	ASP97
B	TYR8
B	ARG14
B	TRP39
B	LYS43
B	LYS50
B	ILE51
B	PRO52
B	GLN63
B	SER64
B	0O5203
B	HOH308
B	HOH312
B	HOH353
B	HOH371

site_id	AC5
Number of Residues	14
Details	BINDING SITE FOR RESIDUE 0O5 B 203

Chain	Residue
B	PHE9
B	MET11
B	GLY13
B	ARG14
B	GLN36
B	ASP96
B	MET99
B	SER100
B	TRP104
B	TYR152
B	ILE155
B	LEU199
B	GSH202
B	HOH321

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 201

Chain	Residue
C	HOH301
C	HOH302
C	HOH303
D	HOH2501
D	HOH2502
D	HOH2503

site_id	AC7
Number of Residues	12
Details	BINDING SITE FOR RESIDUE GSH C 202

Chain	Residue
C	TYR8
C	ARG14
C	TRP39
C	LYS43
C	LYS50
C	ILE51
C	GLN63
C	SER64
C	HOH332
C	HOH340
C	HOH351
D	ASP97

site_id	AC8
Number of Residues	12
Details	BINDING SITE FOR RESIDUE 0O5 C 203

Chain	Residue
C	GLY13
C	ARG14
C	GLN36
C	ASP96
C	MET99
C	SER100
C	TRP104
C	TYR152
C	ILE155
C	LEU199
C	HOH346
C	HOH391

site_id	AC9
Number of Residues	16
Details	BINDING SITE FOR RESIDUE GSH D 201

Chain	Residue
D	SER64
D	0O5202
D	HOH2504
D	HOH2505
D	HOH2523
D	HOH2544
D	HOH2586
D	HOH2616
C	ASP97
D	TYR8
D	ARG14
D	TRP39
D	LYS43
D	LYS50
D	ILE51
D	GLN63

site_id	BC1
Number of Residues	14
Details	BINDING SITE FOR RESIDUE 0O5 D 202

Chain	Residue
D	TYR8
D	PHE9
D	MET11
D	GLY13
D	ARG14
D	GLN36
D	ASP96
D	MET99
D	TRP104
D	TYR152
D	ILE155
D	GSH201
D	HOH2520
D	HOH2592

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	308
Details	Domain: {"description":"GST N-terminal"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	354
Details	Domain: {"description":"GST C-terminal"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	24
Details	Binding site: {"evidences":[{"source":"PubMed","id":"12627223","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15113825","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16547010","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18341273","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19939518","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)