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4DF8

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with aminopentinyl-7-deaza-2-dATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE 0L4 A 901
ChainResidue
AARG573
AARG660
ALYS663
APHE667
AASP785
AMG902
AMG903
AEDO907
ACL910
AHOH1001
AHOH1007
AASP610
AHOH1019
AHOH1049
AHOH1106
BDOC112
CDT204
CDG205
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AASP610
AASP785
A0L4901
AMG903
AHOH1002
AHOH1019

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
AASP610
ATYR611
AASP785
A0L4901
AMG902

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 904
ChainResidue
ALYS354
AASP355
AGLN566
AHOH1010

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 905
ChainResidue
ALEU311
AARG405
AHOH1096

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 906
ChainResidue
AARG313

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 907
ChainResidue
AARG573
AGLU615
AGLN754
AALA757
AALA758
AHIS784
A0L4901
AHOH1079

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE FMT A 908
ChainResidue
AARG704

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 909
ChainResidue
AASP488
ALYS511
BDC106
BDG107
CDG211
CDT212

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 910
ChainResidue
AARG660
ALYS663
A0L4901

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BHOH301
BHOH302
BHOH303
BHOH304
BHOH305
CHOH401

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C 301
ChainResidue
CDG206
CFMT302

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT C 302
ChainResidue
CDG205
CEDO301

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT C 303
ChainResidue
AARG728
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-09-25

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