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3SWC

GLP (G9a-like protein) SET domain in complex with Dnmt3aK44me2 peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0002039molecular_functionp53 binding
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0016279molecular_functionprotein-lysine N-methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
A0046974molecular_functionhistone H3K9 methyltransferase activity
B0002039molecular_functionp53 binding
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0016279molecular_functionprotein-lysine N-methyltransferase activity
B0042054molecular_functionhistone methyltransferase activity
B0046974molecular_functionhistone H3K9 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 301
ChainResidue
ACYS1031
ACYS1044
ACYS1074
ACYS1078

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
ACYS1037
ACYS1074
ACYS1080
ACYS1084

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 303
ChainResidue
ACYS1033
ACYS1037
ACYS1042
ACYS1031

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 304
ChainResidue
ACYS1172
ACYS1225
ACYS1227
ACYS1232

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE SAH A 202
ChainResidue
AMET1105
ATRP1107
ASER1141
ATYR1142
AARG1166
AASN1169
AHIS1170
ATYR1211
APHE1223
ASER1224
ACYS1225
AARG1226
PARG47

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 305
ChainResidue
BCYS1031
BCYS1044
BCYS1074
BCYS1078

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 306
ChainResidue
BZN307
BCYS1037
BCYS1074
BCYS1080
BCYS1084

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 307
ChainResidue
BZN306
BCYS1031
BCYS1033
BCYS1037
BCYS1042

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 308
ChainResidue
BCYS1172
BCYS1225
BCYS1227
BCYS1232

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAH B 201
ChainResidue
BMET1105
BGLY1106
BTRP1107
BSER1141
BTYR1142
BARG1166
BPHE1167
BASN1169
BHIS1170
BTYR1211
BPHE1215
BPHE1223
BCYS1225
BARG1226
QARG47

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues34
DetailsBINDING:
ChainResidueDetails
ACYS1031
AMET1105
ATYR1142
AASN1169
ACYS1172
ACYS1225
AARG1226
ACYS1227
ACYS1232
BCYS1031
BCYS1033
ACYS1033
BCYS1037
BCYS1042
BCYS1044
BCYS1074
BCYS1078
BCYS1080
BCYS1084
BMET1105
BTYR1142
BASN1169
ACYS1037
BCYS1172
BCYS1225
BARG1226
BCYS1227
BCYS1232
ACYS1042
ACYS1044
ACYS1074
ACYS1078
ACYS1080
ACYS1084

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Histone H3K9me binding => ECO:0000269|PubMed:18264113, ECO:0000269|PubMed:20084102
ChainResidueDetails
ATYR1124
BTYR1124

site_idSWS_FT_FI3
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER973
ASER1017
BSER973
BSER1017

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PDB entries from 2024-04-24

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