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3REL

2.7 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Triamminechloroplatinum(II) Chloride

Functional Information from GO Data
ChainGOidnamespacecontents
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005694cellular_componentchromosome
A0030527molecular_functionstructural constituent of chromatin
A0046982molecular_functionprotein heterodimerization activity
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0046982molecular_functionprotein heterodimerization activity
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0030527molecular_functionstructural constituent of chromatin
C0046982molecular_functionprotein heterodimerization activity
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0030527molecular_functionstructural constituent of chromatin
D0046982molecular_functionprotein heterodimerization activity
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005694cellular_componentchromosome
E0030527molecular_functionstructural constituent of chromatin
E0046982molecular_functionprotein heterodimerization activity
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0046982molecular_functionprotein heterodimerization activity
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0030527molecular_functionstructural constituent of chromatin
G0046982molecular_functionprotein heterodimerization activity
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0030527molecular_functionstructural constituent of chromatin
H0046982molecular_functionprotein heterodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN A 1001
ChainResidue
AASP77
HVAL45

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN D 1007
ChainResidue
DVAL45

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 1101
ChainResidue
CARG71
DHIS46
DPRO47
DASP48
DTHR49

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 1102
ChainResidue
CGLY46
CALA47
DTHR87
DSER88
CALA45

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 1103
ChainResidue
GGLY44
GALA45
GGLY46
GALA47
HTHR87
HSER88

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 73
ChainResidue
JDG7

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 74
ChainResidue
JDG68

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 75
ChainResidue
JDG58

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 76
ChainResidue
JDG-3
JDA-2

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 74
ChainResidue
IDG-14

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 75
ChainResidue
IDG71

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 77
ChainResidue
JDG29

site_idBC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 76
ChainResidue
IDG5

site_idBC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 78
ChainResidue
JDG4

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PT I 77
ChainResidue
IDG59
IDG60
IPT80

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 79
ChainResidue
JDG-46

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 78
ChainResidue
IDG-53

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT I 79
ChainResidue
IDG68
IDG69

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PT I 80
ChainResidue
IDA58
IDG59
IPT77

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 81
ChainResidue
IDA-72

site_idCC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 82
ChainResidue
IDG-45

site_idCC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 80
ChainResidue
JDG10

site_idCC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 83
ChainResidue
IDG-16

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 81
ChainResidue
JDG60

site_idCC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 82
ChainResidue
JDG70

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 84
ChainResidue
IDG27

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 83
ChainResidue
JDG-40

site_idDC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 85
ChainResidue
IDG-15

site_idDC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 86
ChainResidue
IDG25

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT I 87
ChainResidue
IDT33
IDG34

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 84
ChainResidue
JDA-73

site_idDC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 85
ChainResidue
JDC-55

site_idDC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 88
ChainResidue
IDG-55

site_idDC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 86
ChainResidue
JDG59
JDG60

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 87
ChainResidue
JDA-18
JDG-17

site_idDC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT F 103
ChainResidue
FMET84

site_idEC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT B 103
ChainResidue
BMET84

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 89
ChainResidue
IDA29

site_idEC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT I 90
ChainResidue
IDG60
IDG61

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 88
ChainResidue
JDG-15

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT I 91
ChainResidue
IDC3
IDA4

site_idEC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 89
ChainResidue
JDG-16
JDG-17

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 90
ChainResidue
JDG67
JDG68

site_idEC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 91
ChainResidue
IPT95

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT J 92
ChainResidue
JDG24
JDC25

site_idFC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 93
ChainResidue
JDG-54

site_idFC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 93
ChainResidue
IDA-46

site_idFC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PT I 94
ChainResidue
IDG-35
IPT95

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PT I 95
ChainResidue
IDG-35
IPT94
JPT91

site_idFC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 96
ChainResidue
IDG-2

site_idFC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT I 97
ChainResidue
IDT7

site_idFC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PT J 106
ChainResidue
JDG-36

Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CALA21-VAL27

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
DARG89-GLY111

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsDNA_BIND:
ChainResidueDetails
BLYS16-LYS20
FLYS16-LYS20
EARG2
EARG17
HLYS2
HLYS9
HLYS12
HLYS17

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BSER1
FSER1

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Symmetric dimethylarginine; by PRMT5 and PRMT7; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BARG3
FARG3
GLYS9
GLYS95

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-lactoyllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS5
FLYS5
HLYS117

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N6-propionyllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS8
BLYS16
BLYS44
BLYS79
FLYS8
FLYS16
FLYS44
FLYS79

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS12
BLYS20
FLYS12
FLYS20

site_idSWS_FT_FI7
Number of Residues4
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS31
BLYS91
FLYS31
FLYS91

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PAK2 => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BSER47
FSER47
CLYS15
CLYS119
GLYS13
GLYS15
GLYS119

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BTYR51
BTYR88
FTYR51
FTYR88

site_idSWS_FT_FI10
Number of Residues2
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS59
ELYS64
FLYS59
ALYS27
ALYS36
ALYS64
ELYS18
ELYS23
ELYS27
ELYS36

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS77
FLYS77

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS31
FLYS31

site_idSWS_FT_FI13
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
ALYS37
BLYS91
FLYS91

site_idSWS_FT_FI14
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ATYR41
ETYR41

site_idSWS_FT_FI15
Number of Residues4
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
ChainResidueDetails
ALYS56
ALYS79
ELYS56
ELYS79

site_idSWS_FT_FI16
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ASER57
ESER57

site_idSWS_FT_FI17
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ATHR80
ATHR107
ETHR80
ETHR107

site_idSWS_FT_FI18
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243
ChainResidueDetails
ASER86
ESER86

site_idSWS_FT_FI19
Number of Residues2
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ALYS115
ELYS115

site_idSWS_FT_FI20
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ALYS122
ELYS122

site_idSWS_FT_FI21
Number of Residues2
DetailsLIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
ACYS110
ECYS110

223790

PDB entries from 2024-08-14

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