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3EVO

Crystal structure of the Mimivirus NDK +Kpn mutant complexed with dTDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TYD A 160
ChainResidue
ALYS9
AARG111
AASN113
AMG142
AHOH154
AHOH167
AHOH178
AHOH187
AHOH218
AHOH246
AHOH282
ATYR50
AHOH303
AHOH399
AHIS53
ATYR58
AASN62
AARG86
ATHR92
AARG103
AILE110

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 142
ChainResidue
AHOH159
ATYD160
AHOH208
AHOH283

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE TYD B 161
ChainResidue
BLYS9
BTYR50
BHIS53
BTYR58
BASN62
BARG86
BTHR92
BARG103
BILE110
BARG111
BASN113
BMG142
BHOH159
BHOH182
BHOH190
BHOH203
BHOH206
BHOH266
BHOH401

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 142
ChainResidue
BTYD161
BHOH184
BHOH210
BHOH231

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDP_KINASES Nucleoside diphosphate kinases active site. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
ChainResidueDetails
AHIS116
BHIS116

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS9
BASN113
ATYR58
AARG86
AARG103
AASN113
BLYS9
BTYR58
BARG86
BARG103

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PDB entries from 2024-03-27

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