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8GF2

Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies eCR3022.20 and CC12.3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-1
Synchrotron siteSSRL
BeamlineBL12-1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-06-24
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97946
Spacegroup nameC 2 2 21
Unit cell lengths157.570, 161.220, 230.117
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.827 - 2.851
R-factor0.2111
Rwork0.209
R-free0.25180
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6xc7
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.900
High resolution limit [Å]2.8507.7302.850
Rmerge0.1450.0581.061
Rmeas0.1580.0631.155
Rpim0.0620.0250.452
Total number of observations434051
Number of reflections6794036053418
<I/σ(I)>4.7
Completeness [%]99.499.399.9
Redundancy6.466.4
CC(1/2)0.9970.660
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293.150.1 M sodium citrate - citric acid buffer pH 5.0, 15% (v/v) ethylene glycol, 1 M lithium chloride, and 10% (w/v) polyethylene glycol 6000

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PDB entries from 2024-07-31

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