8EAZ
HOIL-1/E2-Ub/Ub transthiolation complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 83.953, 95.478, 115.006 |
Unit cell angles | 90.00, 110.58, 90.00 |
Refinement procedure
Resolution | 47.740 - 3.080 |
R-factor | 0.2333 |
Rwork | 0.232 |
R-free | 0.26640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4q5e AlphaFold |
RMSD bond length | 0.002 |
RMSD bond angle | 0.463 |
Data reduction software | XDS (VERSION Feb 5, 2021) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.740 | 3.250 |
High resolution limit [Å] | 3.080 | 3.080 |
Rmerge | 0.230 | 2.624 |
Number of reflections | 31532 | 4460 |
<I/σ(I)> | 4.3 | 0.9 |
Completeness [%] | 99.5 | 96.9 |
Redundancy | 3.5 | 3.6 |
CC(1/2) | 0.986 | 0.397 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 298 | 28% PEG smear broad, 0.2 M sodium chloride, 0.1 M sodium phosphate, pH 6.2 |