7ZJ3
Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-04 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 1.2821 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.319, 123.662, 112.471 |
Unit cell angles | 90.00, 102.80, 90.00 |
Refinement procedure
Resolution | 54.970 - 2.530 |
R-factor | 0.2129 |
Rwork | 0.210 |
R-free | 0.25760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fer |
RMSD bond length | 0.005 |
RMSD bond angle | 0.833 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 109.675 | 2.620 |
High resolution limit [Å] | 2.530 | 2.530 |
Number of reflections | 51031 | 5126 |
<I/σ(I)> | 4.11 | 0.38 |
Completeness [%] | 99.8 | 99.71 |
Redundancy | 6.5 | 6.2 |
CC(1/2) | 0.990 | 0.537 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1 M HEPES pH 7.5 10% (w/v) PEG 8K |