7UY3
Crystal structure of human Fgr tyrosine kinase in complex with TL02-59
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9757 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 151.285, 151.285, 130.518 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.233 - 2.990 |
R-factor | 0.2074 |
Rwork | 0.203 |
R-free | 0.24730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2src |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.233 | 46.233 | 3.070 |
High resolution limit [Å] | 2.990 | 13.370 | 2.990 |
Rmerge | 0.125 | 0.079 | 0.804 |
Rmeas | 0.131 | 0.084 | 0.840 |
Number of reflections | 33705 | 250 | 1311 |
<I/σ(I)> | 11.89 | 21.97 | 2.07 |
Completeness [%] | 99.9 | 95.8 | 99.8 |
Redundancy | 10.954 | 8.804 | 11.23 |
CC(1/2) | 0.997 | 0.996 | 0.909 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | For co-crystallization with TL02-59, Fgr (3.2 mg/mL in 20 mM Tris-HCl, pH 8.3, 100 mM NaCl, and 2 mM TCEP) was mixed with 10 mM TL02-59 (in 100% DMSO) to a final concentration of 120 microM (0.6% DMSO final) and incubated for thirty minutes at 298 K. Diffraction quality crystals were grown by sitting- and hanging-drop vapor diffusion at 277 K by mixing Fgr/TL02-59 in a 1:1 ratio with the mother liquor (0.1 M HEPES, pH 7.5, 0.8 M sodium phosphate, 0.8 M potassium phosphate and 1% 1,2-butanediol) |