7QDT
Crystal structure of a mutant (P393GX) Thyroid Receptor Alpha ligand binding domain designed to model dominant negative human mutations.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-03 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9690 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 143.328, 143.328, 88.502 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 72.060 - 3.000 |
R-factor | 0.18555 |
Rwork | 0.183 |
R-free | 0.22754 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2h79 |
RMSD bond length | 0.016 |
RMSD bond angle | 2.059 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (3.16.1) |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.060 | 3.180 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.135 | 0.700 |
Rmeas | 0.139 | 0.721 |
Rpim | 0.034 | 0.170 |
Number of reflections | 11208 | 1764 |
<I/σ(I)> | 22 | 5.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 16.5 | |
CC(1/2) | 0.999 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2 M Sodium Chloride, 0.1 M Tris pH 8.5, 1.0 M Lithium Sulphate |