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7OM4

Nanobody EgB4 bound to the full extracellular EGFR-EGF complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2019-01-31
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9686
Spacegroup nameP 61 2 2
Unit cell lengths307.610, 307.610, 135.138
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution153.810 - 6.050
R-factor0.2968
Rwork0.296
R-free0.32680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3njp
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]153.8107.150
High resolution limit [Å]6.0506.050
Rmerge0.1871.995
Rmeas0.1992.099
Rpim0.0650.642
Number of reflections6321632
<I/σ(I)>7.81.6
Completeness [%]91.8
Redundancy9.6
CC(1/2)0.9960.548
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M LiSO4, 0.1 M glycine pH 10.5, 1.1 M sodium dihydrogen phosphate and 0.72 M dipotassium hydrogen phosphate

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PDB entries from 2024-11-06

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