7OM4
Nanobody EgB4 bound to the full extracellular EGFR-EGF complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-31 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 307.610, 307.610, 135.138 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 153.810 - 6.050 |
R-factor | 0.2968 |
Rwork | 0.296 |
R-free | 0.32680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3njp |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 153.810 | 7.150 |
High resolution limit [Å] | 6.050 | 6.050 |
Rmerge | 0.187 | 1.995 |
Rmeas | 0.199 | 2.099 |
Rpim | 0.065 | 0.642 |
Number of reflections | 6321 | 632 |
<I/σ(I)> | 7.8 | 1.6 |
Completeness [%] | 91.8 | |
Redundancy | 9.6 | |
CC(1/2) | 0.996 | 0.548 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M LiSO4, 0.1 M glycine pH 10.5, 1.1 M sodium dihydrogen phosphate and 0.72 M dipotassium hydrogen phosphate |