7LP8
The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000983476
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-09 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 89.877, 89.877, 132.604 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.470 - 2.550 |
R-factor | 0.2175 |
Rwork | 0.216 |
R-free | 0.23890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vpt |
RMSD bond length | 0.002 |
RMSD bond angle | 0.541 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 74.400 | 2.660 |
High resolution limit [Å] | 2.550 | 2.550 |
Rmerge | 0.093 | 1.090 |
Rmeas | 0.109 | 1.247 |
Rpim | 0.041 | 0.455 |
Number of reflections | 9199 | 1088 |
<I/σ(I)> | 10.5 | 1.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7 | 7.4 |
CC(1/2) | 0.997 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M HEPES PH 7.8, 1 M AMMONIUM SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15 |