7LEM
Crystal structure of the first bromodomain (BD1) of human BRDT bound to LRRK2-IN-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9700 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.220, 30.020, 72.840 |
Unit cell angles | 90.00, 104.56, 90.00 |
Refinement procedure
Resolution | 35.250 - 1.890 |
R-factor | 0.2027 |
Rwork | 0.200 |
R-free | 0.24740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l73 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.250 | 35.250 | 1.940 |
High resolution limit [Å] | 1.890 | 8.450 | 1.890 |
Rmerge | 0.043 | 0.016 | 0.509 |
Rmeas | 0.051 | 0.020 | 0.599 |
Total number of observations | 85628 | ||
Number of reflections | 23495 | 301 | 1670 |
<I/σ(I)> | 17.14 | 48.77 | 2.63 |
Completeness [%] | 98.7 | 97.1 | 97.7 |
Redundancy | 3.645 | 3.216 | 3.684 |
CC(1/2) | 0.999 | 0.999 | 0.882 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M (NH4)2SO4, 0.1 M sodium cacodylate trihydrate (pH 6.5), and 30 % w/v PEG 8,000 |