7ENZ
Crystal structure of Phenanthredinone moiety in complex with the second bromodomain of BRD2 (BRD2-BD2).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-05 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54056 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 32.023, 52.672, 71.655 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.100 - 1.700 |
R-factor | 0.1905 |
Rwork | 0.189 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xhk |
RMSD bond length | 0.007 |
RMSD bond angle | 0.813 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18_3855: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 14.100 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.130 | 0.350 |
Number of reflections | 13875 | 700 |
<I/σ(I)> | 7.6 | |
Completeness [%] | 99.7 | |
Redundancy | 5.8 | |
CC(1/2) | 0.985 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 50 mM Tris pH 7.5, 50 mM NaCl, 25% PEG MME 2000 |