7AHJ
Crystal structure of PPARgamma V290M mutant ligand binding domain in complex with farglitazar
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-06-15 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 0.87260 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.960, 61.240, 118.510 |
Unit cell angles | 90.00, 103.17, 90.00 |
Refinement procedure
Resolution | 28.920 - 2.100 |
R-factor | 0.2021 |
Rwork | 0.200 |
R-free | 0.23660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1prg |
RMSD bond length | 0.008 |
RMSD bond angle | 1.001 |
Data reduction software | MOSFLM (7.0.4) |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER (2.1.4) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.940 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.070 | 0.329 |
Number of reflections | 38079 | 5528 |
<I/σ(I)> | 10.5 | 3.3 |
Completeness [%] | 99.9 | 100 |
Redundancy | 3.8 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M TRIS pH8 0.92-1.2M Sodium Citrate 0.1mM TCEP 0.5 micro molar Farglitazar. |