7A17

Crystal structure of the 5-phosphatase domain of Synaptojanin1 bound to its substrate diC8-PI(3,4,5)P3 in complex with a nanobody

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SOLEIL BEAMLINE PROXIMA 2
Synchrotron site	SOLEIL
Beamline	PROXIMA 2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-11-13
Detector	DECTRIS EIGER X 9M
Wavelength(s)	0.976246
Spacegroup name	C 1 2 1
Unit cell lengths	169.323, 109.205, 100.902
Unit cell angles	90.00, 120.62, 90.00

Refinement procedure

Resolution	87.390 - 2.730
R-factor	0.19881
Rwork	0.196
R-free	0.25744
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	1i9y 3n9v 3mtc 4cmn 4nc2
RMSD bond length	0.005
RMSD bond angle	1.079
Data reduction software	XDS (Mar 15, 2019 (BUILT 20190806))
Data scaling software	Aimless (0.7.4)
Phasing software	PHASER (2.6.0)
Refinement software	REFMAC (5.8.0258)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	87.390	3.020
High resolution limit [Å]	2.728	2.728
Rmerge	0.200
Rmeas	0.282
Rpim	0.148
Number of reflections	32151	2473
<I/σ(I)>	5.3	1.4
Completeness [%]	91.5
Redundancy	3.5	3.6
CC(1/2)	0.970	0.474

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	5.5	293	15% PEG 3350, 0.1 M sodium citrate pH 5.5, 13% ethanol