7KDZ
Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to TP-238
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 42.670, 42.670, 126.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.710 - 1.540 |
R-factor | 0.1865 |
Rwork | 0.185 |
R-free | 0.20510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3uv2 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.710 | 31.710 | 1.580 |
High resolution limit [Å] | 1.540 | 6.890 | 1.540 |
Rmerge | 0.074 | 0.041 | 0.925 |
Rmeas | 0.077 | 0.043 | 0.961 |
Total number of observations | 255441 | ||
Number of reflections | 18158 | 261 | 1314 |
<I/σ(I)> | 18.45 | 41.88 | 3.13 |
Completeness [%] | 99.8 | 99.6 | 99.9 |
Redundancy | 14.068 | 11.456 | 13.846 |
CC(1/2) | 0.999 | 0.999 | 0.883 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 290 | 0.2M Lithium sulfate monohydrate, 0.1M BIS-TRIS pH6.5, 25 percent polyethylene glycol 3,350 |