6ZS3
Crystal structure of the fifth bromodomain of human protein polybromo-1 in complex with 2-(6-amino-5-(piperazin-1-yl)pyridazin-3-yl)phenol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-26 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.91842 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 56.180, 41.190, 133.907 |
Unit cell angles | 90.00, 96.35, 90.00 |
Refinement procedure
Resolution | 53.600 - 1.670 |
R-factor | 0.213029633087 |
Rwork | 0.211 |
R-free | 0.24308 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fh7 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.805 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.600 | 1.690 |
High resolution limit [Å] | 1.670 | 1.670 |
Rmerge | 0.097 | 0.290 |
Number of reflections | 35732 | 1761 |
<I/σ(I)> | 9.1 | 3.9 |
Completeness [%] | 99.4 | |
Redundancy | 5.1 | |
CC(1/2) | 0.990 | 0.927 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 22% (w/v) PEG 3350, 0.2 M sodium malonate, 10% (v/v) ethylene glycol, 0.1 M bis-tris propane pH 7.1 |