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6ZO7

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyCCD
Collection date2015-02-13
DetectorADSC QUANTUM 315r
Wavelength(s)0.980
Spacegroup nameP 21 21 21
Unit cell lengths144.732, 157.683, 244.044
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.860 - 2.850
R-factor0.2397
Rwork0.238
R-free0.27080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jmn
RMSD bond length0.002
RMSD bond angle1.173
Data reduction softwareXDS
Data scaling softwareAimless (0.5.21)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.86048.8502.900
High resolution limit [Å]2.85015.6102.850
Rmerge0.2970.0402.146
Rmeas0.3190.0462.300
Rpim0.1140.0220.823
Number of reflections1306328946399
<I/σ(I)>70.9
Completeness [%]100.097.1100
Redundancy7.86.67.9
CC(1/2)0.9710.9520.552
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.62910.05M ADA, PH 6.6, 0.15-0.25M AMMONIUM SULFATE, 5% GLYCEROL, 8-9% PEG4000, 0.003M RIFAMPICIN QUINONE, 0.0012M MINOCYCLINE

222036

PDB entries from 2024-07-03

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