6WU8
Structure of human SHP2 in complex with inhibitor IACS-13909
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.115830 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.671, 83.203, 217.701 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.129 - 2.400 |
R-factor | 0.2126 |
Rwork | 0.209 |
R-free | 0.27040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2shp |
Data reduction software | MOSFLM (7.1.0) |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (v1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.130 | 42.130 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.202 | 0.068 | 1.622 |
Rmeas | 0.212 | 0.072 | 1.709 |
Rpim | 0.064 | 0.022 | 0.523 |
Total number of observations | 395923 | 9143 | 37695 |
Number of reflections | 37950 | 875 | 3726 |
<I/σ(I)> | 8.1 | 20 | 1.8 |
Completeness [%] | 95.3 | 99.2 | 90.6 |
Redundancy | 10.4 | 10.4 | 10.1 |
CC(1/2) | 0.992 | 0.998 | 0.405 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 300 mM potassium formate, 14% w/v PEG3350 |