6VEL
Crystal Structure of Human E-cadherin bound by mouse monoclonal antibody 66E8Fab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-07-18 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 142.170, 142.170, 90.320 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.540 - 2.650 |
R-factor | 0.1961 |
Rwork | 0.194 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2o72 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.540 | 46.540 | 2.720 |
High resolution limit [Å] | 2.650 | 11.850 | 2.650 |
Rmerge | 0.061 | 0.023 | 0.595 |
Rmeas | 0.065 | 0.025 | 0.631 |
Total number of observations | 269932 | ||
Number of reflections | 30906 | 383 | 2243 |
<I/σ(I)> | 24.68 | 54.39 | 3.56 |
Completeness [%] | 99.9 | 96 | 100 |
Redundancy | 8.734 | 7.154 | 8.984 |
CC(1/2) | 0.999 | 0.999 | 0.920 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | A complex of HosaA.19747.a.KW2, MumuA.20194.a.LG23, and MumuA.20195.a.LH23 was crystallized at 10.4 mg/ml at 14C and mixed 1:1 with 12.5% (w/v) PEG 4000, 20% (v/v) 1,2,6-hexanetriol, 0.1M GlyGly/AMPD pH 8.5, 0.03M of each Lithium sulfate, Sodium sulfate, and Potassium sulfate. Tray 307437a10: puck ckt8-9. |